tRNAscan-SE Analysis of the Bacteroides fragilis NCTC 9434 Genome
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| Predicted tRNA Secondary Structures |
Click on "View tRNA" buttons to view 2-D tRNA structures
Cove-predicted tRNA secondary structures rendered by
NAVIEW (c) 1988 Robert E. Bruccoleri
chr.trna16 (3621322-3621395) Length: 74 bp
Type: Ala Anticodon: GGC at 35-37 (3621356-3621358) Score: 62.47
Seq: GGGGGGTTAGCTCATCTGGCtAGAGCGTAACACTGGCAGTGTTAAGGtGATCGGTTCGAGTCCGATACTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna25 (5128163-5128090) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (5128129-5128127) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna34 (4658009-4657936) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (4657975-4657973) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna36 (4600084-4600011) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (4600050-4600048) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna41 (4413608-4413535) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (4413574-4413572) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna45 (3854412-3854339) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (3854378-3854376) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna47 (3205273-3205200) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (3205239-3205237) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna55 (2891669-2891596) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (2891635-2891633) Score: 54.07
Seq: GGTCGCGTAGCTCAACTGAAtAGAGTAGCTGACTACGGATCAGCCGGtTACAGGTTTGAATCCTGTCGCGATCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna57 (2891481-2891405) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (2891447-2891445) Score: 54.69
Seq: GGTCGCGTAGCTCAACTGAAtAGAGTAGCTGACTACGGATCAGCCGGtTACAGGTTTGAATCCTGTCGCGATCACAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna56 (2891577-2891504) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (2891543-2891541) Score: 55.81
Seq: GGCCGCGTAGCTCAACTGAAtAGAGTAGCTGACTACGGATCAGCCGGtTACAGGTTTGAATCCTGTCGCGGTCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna42 (4256370-4256296) Length: 75 bp
Type: Arg Anticodon: CCG at 34-36 (4256337-4256335) Score: 36.35
Seq: GCTCCTGTAGTTCAACGAAtAGAATGTAGGTTTCCGGTACCTAAGATAAGGGTTTGATTCCCTTCGGGAGTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna26 (5013982-5013908) Length: 75 bp
Type: Arg Anticodon: CCT at 34-36 (5013949-5013947) Score: 51.34
Seq: GGCCCTGTAGTTCAACGGAtAGAATAGATGTTTCCTAAACATTAGATAGGGGTTCGATTCTCCTCGGGGCTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna12 (2677212-2677288) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (2677246-2677248) Score: 76.34
Seq: GGTTCCGTAGCTCAGCTGGAtAGAGCAACGCCCTTCTAAGGCGTGGGtCAAGCGTTCGAATCGCTTCGGAATCACAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna21 (4923439-4923512) Length: 74 bp
Type: Asn Anticodon: GTT at 35-37 (4923473-4923475) Score: 79.33
Seq: TCTTCCTTAGCTCAGTCGGTtAGAGCATCTGACTGTTAATCAGAGGGtCCTTGGTTCAAGTCCAAGAGGAAGAG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna22 (4923542-4923618) Length: 77 bp
Type: Asn Anticodon: GTT at 35-37 (4923576-4923578) Score: 79.94
Seq: TCTTCCTTAGCTCAGTCGGTtAGAGCATCTGACTGTTAATCAGAGGGtCCTTGGTTCAAGTCCAAGAGGAAGAGCAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna13 (3354845-3354918) Length: 74 bp
Type: Asp Anticodon: GTC at 35-37 (3354879-3354881) Score: 85.50
Seq: GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGGGtCACGGGTTCGAGTCCCGTACGCACCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna11 (2466259-2466335) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (2466293-2466295) Score: 86.11
Seq: GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGGGtCACGGGTTCGAGTCCCGTACGCACCGCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna14 (3354949-3355025) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (3354983-3354985) Score: 86.11
Seq: GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGGGtCACGGGTTCGAGTCCCGTACGCACCGCAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna8 (1623835-1623906) Length: 72 bp
Type: Cys Anticodon: GCA at 34-36 (1623868-1623870) Score: 51.74
Seq: GGTTCCTTGGATGAGTGGCtTAGTCAGCGGTCTGCAAAACCGTGTACGGCGGTTCGAATCCGCCAGGAACCT
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna4 (860622-860695) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (860654-860656) Score: 47.13
Seq: TGGGCTATGGTGTAATGGTAACACTACAGATTCTGGTCCTGTCAtTTCTGGTTCGAGTCCAGATAGCCCAACAA
Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna1 (79576-79646) Length: 71 bp
Type: Gln Anticodon: TTG at 33-35 (79608-79610) Score: 47.95
Seq: TGTCCTATGGTGTAATGGTAGCACAACAGTTTTTGGTTCTGTTTGTCTAAGTTCGAATCTTGGTAGGACAA
Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna10 (2194407-2194481) Length: 75 bp
Type: Glu Anticodon: CTC at 34-36 (2194440-2194442) Score: 57.41
Seq: GGTGGGTTCGTCTAACGGTtAGGACACATGCCTCTCACGCATGTAATACGAGTTCGATTCTCGTACCCACTACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna73 (276380-276306) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (276347-276345) Score: 50.05
Seq: GGCCCGTTCGTCTATCGGTtAGGACGCAAGATTTTCATTCTTGAAAGGGGGGTTCGATTCCCCCACGGGCTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna54 (2932465-2932390) Length: 76 bp
Type: Gly Anticodon: CCC at 34-36 (2932432-2932430) Score: 72.47
Seq: GCGGTAGTAGCTCAGTTGGCAGAGCGGCGGCTTCCCAAGCCGCAGGtCACGAGTTCGACCCTCGCCTACCGCTCAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<<<<<....
chr.trna2 (537974-538046) Length: 73 bp
Type: Gly Anticodon: GCC at 34-36 (538007-538009) Score: 84.53
Seq: GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna48 (2978437-2978365) Length: 73 bp
Type: Gly Anticodon: GCC at 34-36 (2978404-2978402) Score: 84.53
Seq: GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna53 (2977888-2977816) Length: 73 bp
Type: Gly Anticodon: GCC at 34-36 (2977855-2977853) Score: 84.53
Seq: GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna51 (2978114-2978039) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (2978081-2978079) Score: 85.15
Seq: GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTTCCGCTCAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna30 (4726891-4726819) Length: 73 bp
Type: Gly Anticodon: TCC at 34-36 (4726858-4726856) Score: 68.88
Seq: GCGGAAGTAGCTCAGTTGATAGAGCATTAGCCTTCCAAGCTGAGGGtCGCGGGTTTGAGCCCCGTCTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna66 (1096680-1096605) Length: 76 bp
Type: Gly Anticodon: TCC at 34-36 (1096647-1096645) Score: 69.50
Seq: GCGGAAGTAGCTCAGTTGATAGAGCATTAGCCTTCCAAGCTGAGGGtCGCGGGTTTGAGCCCCGTCTTCCGCTCTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna15 (3562730-3562805) Length: 76 bp
Type: His Anticodon: GTG at 35-37 (3562764-3562766) Score: 69.34
Seq: GTGGCTGTAGTTCAGTTGGTtAGAGCGTCAGATTGTGGTTCTGAATGtCGTGGGTTCGAGTCCCATCTGCCACCCA
Str: >>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<...
chr.trna24 (5128268-5128192) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (5128234-5128232) Score: 86.36
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna33 (4658114-4658038) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (4658080-4658078) Score: 86.36
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna35 (4600189-4600113) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (4600155-4600153) Score: 86.36
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna40 (4413713-4413637) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (4413679-4413677) Score: 86.36
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna44 (3854517-3854441) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (3854483-3854481) Score: 86.36
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna46 (3205378-3205302) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (3205344-3205342) Score: 86.36
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna27 (4852954-4852871) Length: 84 bp
Type: Leu Anticodon: CAA at 35-37 (4852920-4852918) Score: 50.22
Seq: GCCCAGATGGCGGAATCGGTaGACGCGCTGGTCTCAAACACCAGTGGATTCACTTCCATCCCGGTTCGACCCCGGGTCTGGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>......<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna49 (2978339-2978255) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (2978305-2978303) Score: 51.53
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCACGTTTCAGGTGCGTGTGTCGAGAGGCATGCAGGTTCGAGTCCTGTTCTGGGCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna52 (2977977-2977893) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (2977943-2977941) Score: 51.53
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCACGTTTCAGGTGCGTGTGTCGAGAGGCATGCAGGTTCGAGTCCTGTTCTGGGCACTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna50 (2978220-2978137) Length: 84 bp
Type: Leu Anticodon: GAG at 35-37 (2978186-2978184) Score: 47.76
Seq: GGAGAGGTGGCGGAATTGGTaGACGCGCTACTTTGAGGGGGTAGTGACATTACTGTCGTGGGAGTTCGAGTCTCCTTCTCTTCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna3 (538061-538144) Length: 84 bp
Type: Leu Anticodon: TAA at 34-36 (538094-538096) Score: 60.93
Seq: GCTCGAATGGTGGAATGGTaGACACGAAGGACTTAAAATCCTTTGGCCATTGCGGCTGTGCGGGTTCAAGTCCCGCTTCGAGTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>.>..><..<.<..>>>>>.......<<<<<<<<<<<<.
chr.trna72 (420065-419981) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (420031-420029) Score: 67.89
Seq: GCGGATGTGGCGTAATTGGTaGCCGCGCCAGACTTAGGATCTGGTGTCTCGCGACGTGTAGGTTCGAGTCCTATCATCCGCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.><.<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna60 (2778300-2778225) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2778267-2778265) Score: 81.92
Seq: GCACTCTTAGCTCAGCTGGTAGAGCAATTGACTCTTAATCAATGGGtCCAGGGTTCGAGTCCCTGAGGGTGTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna61 (2774938-2774863) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2774905-2774903) Score: 81.92
Seq: GCACTCTTAGCTCAGCTGGTAGAGCAATTGACTCTTAATCAATGGGtCCAGGGTTCGAGTCCCTGAGGGTGTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna62 (2385137-2385065) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (2385104-2385102) Score: 70.05
Seq: GATTCGCTAGCTCAGCAGGTAGAGCACAACACTTTTAATGTTGGGGtCCTGGGTTCGAGCCCCAGGCGGATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna68 (698249-698177) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (698216-698214) Score: 70.05
Seq: GATTCGCTAGCTCAGCAGGTAGAGCACAACACTTTTAATGTTGGGGtCCTGGGTTCGAGCCCCAGGCGGATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna23 (5117302-5117375) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (5117336-5117338) Score: 73.67
Seq: GGGCTTATAGCTCAGTTGGTtAGAGCAACAGACTCATAATCTGGAGGtCCTAGGTTCAAGCCCTAGTTGGCCCA
Str: >>>>>.>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<.<<<<<.
chr.trna19 (4639785-4639860) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (4639818-4639820) Score: 74.39
Seq: CGCGGAGTGGAGCAGTTGGTAGCTCGTTGGGCTCATAACCCAAAGGtCGTCTGTTCGAGTCAGGCCTCCGCAACTA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
chr.trna69 (643445-643369) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (643411-643409) Score: 92.99
Seq: GGCGGGATAGCTCAGCTGGTtAGAGCGCATGATTCATAATCATGAGGtCCCCGGTTCAATCCCGGGTCCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna17 (3863283-3863355) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (3863316-3863318) Score: 82.07
Seq: GGTGCCATAGCTCAGTTGGTAGAGCAAAGGACTGAAAATCCTTGTGtCCCCGGTTCGATTCCTGGTGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<.
chr.trna70 (562044-561972) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (562011-562009) Score: 82.07
Seq: GGTGCCATAGCTCAGTTGGTAGAGCAAAGGACTGAAAATCCTTGTGtCCCCGGTTCGATTCCTGGTGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<.
chr.trna71 (561959-561887) Length: 73 bp
Type: Pro Anticodon: CGG at 34-36 (561926-561924) Score: 74.71
Seq: CGGAATGTAGCGCAGTTGGTAGCGCACTACGTTCGGGACGTAGGGGtCGGGCGTTCGAGTCGCCTCATTCCGA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna67 (816009-815932) Length: 78 bp
Type: Pro Anticodon: GGG at 36-38 (815974-815972) Score: 65.93
Seq: CGGGGTGTAGCTCAGCCcGGTtAGAGTACGCGTCTGGGGGGCGTGTGGtCGCTGGTTCGAATCCAGTCACCCCGACTA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna59 (2837552-2837475) Length: 78 bp
Type: Pro Anticodon: TGG at 36-38 (2837517-2837515) Score: 81.48
Seq: CGGGGTGTAGCGCAGTCcGGTtAGCGCACCAGCTTTGGGAGCTGGGGGtCGTGGGTTCGAATCCCGCTACCCCGACAA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna58 (2837664-2837587) Length: 78 bp
Type: Pro Anticodon: TGG at 36-38 (2837629-2837627) Score: 82.39
Seq: CGGGGTGTAGCGCAGTCcGGTtAGCGCACCTGCTTTGGGAGCAGGGGGtCGTGGGTTCGAATCCCGCTACCCCGACAA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna20 (4742264-4742354) Length: 91 bp
Type: Ser Anticodon: CGA at 35-37 (4742298-4742300) Score: 42.36
Seq: GGAAAGATGCCAGAGTGATcgAATGGGCCGGACTCGAAATCCGGTGAACGGCTtGTCCGTTCCGTGGGTTTGAATCCCACTCTTTCCGCAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>.>.<.<<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna9 (2194242-2194328) Length: 87 bp
Type: Ser Anticodon: GCT at 35-37 (2194276-2194278) Score: 59.32
Seq: GGAAGTTTGGGTGAGTGGCtgAAACCACCAGTTTGCTAAACTGACGTACGGGTAACCGTACCGGGGGTTCGAATCCCCCAGCTTCCG
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<.
chr.trna43 (4155450-4155363) Length: 88 bp
Type: Ser Anticodon: GGA at 35-37 (4155416-4155414) Score: 62.11
Seq: GGAGAGATGCTCGAGTGGTtgAAGAGGCACGCCTGGAAAGCGTGTATACGCCAAAaGTGTATCGCGGGTTCGAATCCCGCTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<.
chr.trna6 (1482663-1482747) Length: 85 bp
Type: Ser Anticodon: TGA at 35-37 (1482697-1482699) Score: 48.26
Seq: GGAGAGGTGGCAGAGTGGTcgATTGCGGCGGTCTTGAAAACCGTTGTACTGCGAGGTACCCGGGGTTCGAATCCCTGTCTCTCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>>.><.<<<<<.>>>>>.......<<<<<<<<<<<<.
chr.trna7 (1588839-1588923) Length: 85 bp
Type: Ser Anticodon: TGA at 35-37 (1588873-1588875) Score: 48.26
Seq: GGAGAGGTGGCAGAGTGGTcgATTGCGGCGGTCTTGAAAACCGTTGTACTGCGAGGTACCCGGGGTTCGAATCCCTGTCTCTCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>>.><.<<<<<.>>>>>.......<<<<<<<<<<<<.
chr.trna63 (1987323-1987251) Length: 73 bp
Type: Thr Anticodon: CGT at 34-36 (1987290-1987288) Score: 79.29
Seq: GCCGCTATAGCTCAGTCGGTAGAGCAACGCATTCGTAACGCGTAGGtCGCCAGTTCAAGTCTGGCTAGCGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna31 (4726808-4726737) Length: 72 bp
Type: Thr Anticodon: GGT at 33-35 (4726776-4726774) Score: 81.61
Seq: GCTGTTATAGCTCAGTGGTAGAGCACTTCCTTGGTAAGGAAGAGGtCCCGGGTTCAAATCCCGGTAACAGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna28 (4727153-4727077) Length: 77 bp
Type: Thr Anticodon: TGT at 35-37 (4727119-4727117) Score: 73.56
Seq: GCCTCTTTAGCTCAGTTGGCcAGAGCACGTGATTTGTAATCTCGGGGtCGTTGGTTCGAATCCGACAAGAGGCTCAA
Str: >>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna5 (1412164-1412240) Length: 77 bp
Type: Thr Anticodon: TGT at 35-37 (1412198-1412200) Score: 73.56
Seq: GCCTCTTTAGCTCAGTTGGCcAGAGCACGTGATTTGTAATCTCGGGGtCGTTGGTTCGAATCCGACAAGAGGCTCAA
Str: >>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna64 (1645817-1645741) Length: 77 bp
Type: Thr Anticodon: TGT at 35-37 (1645783-1645781) Score: 73.56
Seq: GCCTCTTTAGCTCAGTTGGCcAGAGCACGTGATTTGTAATCTCGGGGtCGTTGGTTCGAATCCGACAAGAGGCTCAA
Str: >>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna18 (3999770-3999842) Length: 73 bp
Type: Trp Anticodon: CCA at 34-36 (3999803-3999805) Score: 80.46
Seq: ACGGGAGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGTGtCGGGAGTTCGAGCCTCTCCTCCCGTG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna32 (4725448-4725373) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (4725415-4725413) Score: 81.08
Seq: ACGGGAGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGTGtCGGGAGTTCGAGCCTCTCCTCCCGTGCTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna65 (1096771-1096686) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (1096737-1096735) Score: 63.89
Seq: GGGCAAATACCAGAGTGGCcaAATGGGGCAGACTGTAAATCTGCTGTCTTTCGACTtCGGTGGTTCGAATCCATCTTTGCCCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna29 (4727005-4726920) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (4726971-4726969) Score: 65.64
Seq: GGGCAAATACCAGAGTGGCcaAATGGGGCAGACTGTAAATCTGCTGGCTTACGCCTtCGGTGGTTCGAATCCATCTTTGCCCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna38 (4476707-4476633) Length: 75 bp
Type: Val Anticodon: TAC at 36-38 (4476672-4476670) Score: 90.62
Seq: GGGCGTTTAGCTCAGCTGGTtcAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGAATCCGTCAACGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna39 (4476581-4476507) Length: 75 bp
Type: Val Anticodon: TAC at 36-38 (4476546-4476544) Score: 90.62
Seq: GGGCGTTTAGCTCAGCTGGTtcAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGAATCCGTCAACGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna37 (4476811-4476734) Length: 78 bp
Type: Val Anticodon: TAC at 36-38 (4476776-4476774) Score: 91.24
Seq: GGGCGTTTAGCTCAGCTGGTtcAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGAATCCGTCAACGCCCACAA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan.
Please email lowe@soe.ucsc.edu
with any questions and comments. To submit corrections, please use our
Bug and Request Tracking System.