tRNAscan-SE Analysis of the Bacteroides fragilis NCTC 9434 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

tRNAs Sorted by Genome Locus

plain text version

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	79576	79646	Gln	TTG	0	0	47.95	19.50	28.45	Both
chr	2	537974	538046	Gly	GCC	0	0	84.53	58.48	26.05	Both
chr	3	538061	538144	Leu	TAA	0	0	60.93	36.05	24.88	Both
chr	4	860622	860695	Gln	CTG	0	0	47.13	18.00	29.13	Both
chr	5	1412164	1412240	Thr	TGT	0	0	73.56	56.97	16.59	Both
chr	6	1482663	1482747	Ser	TGA	0	0	48.26	21.55	26.71	Both
chr	7	1588839	1588923	Ser	TGA	0	0	48.26	21.55	26.71	Both
chr	8	1623835	1623906	Cys	GCA	0	0	51.74	26.29	25.45	Both
chr	9	2194242	2194328	Ser	GCT	0	0	59.32	28.62	30.70	Both
chr	10	2194407	2194481	Glu	CTC	0	0	57.41	30.43	26.98	Eufind
chr	11	2466259	2466335	Asp	GTC	0	0	86.11	62.77	23.34	Both
chr	12	2677212	2677288	Arg	TCT	0	0	76.34	45.45	30.89	Both
chr	13	3354845	3354918	Asp	GTC	0	0	85.50	62.18	23.32	Both
chr	14	3354949	3355025	Asp	GTC	0	0	86.11	62.77	23.34	Both
chr	15	3562730	3562805	His	GTG	0	0	69.34	56.81	12.53	Both
chr	16	3621322	3621395	Ala	GGC	0	0	62.47	41.91	20.56	Both
chr	17	3863283	3863355	Phe	GAA	0	0	82.07	60.85	21.22	Both
chr	18	3999770	3999842	Trp	CCA	0	0	80.46	56.06	24.40	Both
chr	19	4639785	4639860	Met	CAT	0	0	74.39	40.53	33.86	Both
chr	20	4742264	4742354	Pseudo	CGA	0	0	42.36	2.84	39.52	Both
chr	21	4923439	4923512	Asn	GTT	0	0	79.33	46.37	32.96	Both
chr	22	4923542	4923618	Asn	GTT	0	0	79.94	46.96	32.98	Both
chr	23	5117302	5117375	Met	CAT	0	0	73.67	62.53	11.14	Both
chr	24	5128268	5128192	Ile	GAT	0	0	86.36	58.11	28.25	Both
chr	25	5128163	5128090	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	26	5013982	5013908	Arg	CCT	0	0	51.34	35.79	15.55	Both
chr	27	4852954	4852871	Leu	CAA	0	0	50.22	19.96	30.26	Both
chr	28	4727153	4727077	Thr	TGT	0	0	73.56	56.97	16.59	Both
chr	29	4727005	4726920	Tyr	GTA	0	0	65.64	28.43	37.21	Both
chr	30	4726891	4726819	Gly	TCC	0	0	68.88	53.83	15.05	Both
chr	31	4726808	4726737	Thr	GGT	0	0	81.61	53.25	28.36	Both
chr	32	4725448	4725373	Trp	CCA	0	0	81.08	56.66	24.42	Both
chr	33	4658114	4658038	Ile	GAT	0	0	86.36	58.11	28.25	Both
chr	34	4658009	4657936	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	35	4600189	4600113	Ile	GAT	0	0	86.36	58.11	28.25	Both
chr	36	4600084	4600011	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	37	4476811	4476734	Val	TAC	0	0	91.24	72.11	19.13	Both
chr	38	4476707	4476633	Val	TAC	0	0	90.62	71.52	19.10	Both
chr	39	4476581	4476507	Val	TAC	0	0	90.62	71.52	19.10	Both
chr	40	4413713	4413637	Ile	GAT	0	0	86.36	58.11	28.25	Both
chr	41	4413608	4413535	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	42	4256370	4256296	Arg	CCG	0	0	36.35	11.78	24.57	Both
chr	43	4155450	4155363	Ser	GGA	0	0	62.11	30.90	31.21	Both
chr	44	3854517	3854441	Ile	GAT	0	0	86.36	58.11	28.25	Both
chr	45	3854412	3854339	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	46	3205378	3205302	Ile	GAT	0	0	86.36	58.11	28.25	Both
chr	47	3205273	3205200	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	48	2978437	2978365	Gly	GCC	0	0	84.53	58.48	26.05	Both
chr	49	2978339	2978255	Leu	CAG	0	0	51.53	36.20	15.33	Both
chr	50	2978220	2978137	Leu	GAG	0	0	47.76	22.81	24.95	Both
chr	51	2978114	2978039	Gly	GCC	0	0	85.15	59.08	26.07	Both
chr	52	2977977	2977893	Leu	CAG	0	0	51.53	36.20	15.33	Both
chr	53	2977888	2977816	Gly	GCC	0	0	84.53	58.48	26.05	Both
chr	54	2932465	2932390	Gly	CCC	0	0	72.47	52.82	19.65	Both
chr	55	2891669	2891596	Arg	ACG	0	0	54.07	32.34	21.73	Both
chr	56	2891577	2891504	Arg	ACG	0	0	55.81	35.78	20.03	Both
chr	57	2891481	2891405	Arg	ACG	0	0	54.69	32.93	21.76	Both
chr	58	2837664	2837587	Pro	TGG	0	0	82.39	66.63	15.76	Both
chr	59	2837552	2837475	Pro	TGG	0	0	81.48	64.86	16.62	Both
chr	60	2778300	2778225	Lys	CTT	0	0	81.92	57.91	24.01	Both
chr	61	2774938	2774863	Lys	CTT	0	0	81.92	57.91	24.01	Both
chr	62	2385137	2385065	Lys	TTT	0	0	70.05	36.77	33.28	Both
chr	63	1987323	1987251	Thr	CGT	0	0	79.29	58.85	20.44	Both
chr	64	1645817	1645741	Thr	TGT	0	0	73.56	56.97	16.59	Both
chr	65	1096771	1096686	Tyr	GTA	0	0	63.89	27.09	36.80	Both
chr	66	1096680	1096605	Gly	TCC	0	0	69.50	54.43	15.07	Both
chr	67	816009	815932	Pro	GGG	0	0	65.93	49.05	16.88	Both
chr	68	698249	698177	Lys	TTT	0	0	70.05	36.77	33.28	Both
chr	69	643445	643369	Met	CAT	0	0	92.99	70.34	22.65	Both
chr	70	562044	561972	Phe	GAA	0	0	82.07	60.85	21.22	Both
chr	71	561959	561887	Pro	CGG	0	0	74.71	40.02	34.69	Both
chr	72	420065	419981	Leu	TAG	0	0	67.89	42.03	25.86	Both
chr	73	276380	276306	Glu	TTC	0	0	50.05	25.73	24.32	Eufind

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.