tRNAscan-SE Analysis of the Bacillus thuringiensis konkukian Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	10994	11070	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	2	11079	11154	View	Ala	TGC	0	0	93.92	76.70	17.22	Both
chr	3	21776	21868	View	Ser	TGA	0	0	72.57	40.92	31.65	Both
chr	4	30795	30871	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	5	30880	30955	View	Ala	TGC	0	0	93.92	76.70	17.22	Both
chr	6	64440	64513	View	Met	CAT	0	0	75.69	63.20	12.49	Both
chr	7	64527	64598	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	8	87281	87356	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	9	87361	87436	View	Thr	TGT	0	0	95.44	77.54	17.90	Both
chr	10	87450	87525	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	11	87541	87621	View	Leu	TAG	0	0	66.65	43.61	23.04	Both
chr	12	87651	87725	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	13	87742	87830	View	Leu	TAA	0	0	71.28	45.92	25.36	Both
chr	14	87834	87907	View	Arg	ACG	0	0	69.97	55.63	14.34	Both
chr	15	87916	87989	View	Pro	TGG	0	0	85.68	64.90	20.78	Both
chr	16	87999	88074	View	Ala	TGC	0	0	93.92	76.70	17.22	Both
chr	17	156050	156124	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	18	156129	156201	View	Thr	GGT	0	0	78.48	52.38	26.10	Both
chr	19	156226	156300	View	Glu	TTC	0	0	79.30	54.23	25.07	Both
chr	20	156306	156381	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	21	156399	156482	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both
chr	22	156548	156622	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	23	156628	156703	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	24	156709	156780	View	Gly	GCC	0	0	80.56	57.42	23.14	Both
chr	25	156791	156863	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	26	251006	251080	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	27	251084	251174	View	Ser	GCT	0	0	67.93	29.76	38.17	Both
chr	28	251183	251257	View	Glu	TTC	0	0	79.30	54.23	25.07	Both
chr	29	251262	251337	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	30	251384	251459	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	31	251547	251621	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	32	251627	251699	View	Lys	TTT	0	0	90.38	65.95	24.43	Both
chr	33	251716	251801	View	Leu	GAG	0	0	57.19	28.11	29.08	Both
chr	34	251897	251973	View	Arg	ACG	0	0	78.27	63.91	14.36	Both
chr	35	251978	252054	View	Pro	TGG	0	0	93.98	73.17	20.81	Both
chr	36	252056	252126	View	Gly	TCC	0	0	71.78	43.08	28.70	Both
chr	37	257001	257077	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	38	257081	257156	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	39	526293	526367	View	Asn	GTT	0	0	86.53	59.59	26.94	Both
chr	40	526370	526461	View	Ser	GGA	0	0	63.66	27.80	35.86	Both
chr	41	526479	526553	View	Glu	TTC	0	0	79.30	54.23	25.07	Both
chr	42	526559	526634	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	43	526659	526735	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	44	526739	526814	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	45	526824	526899	View	Phe	GAA	0	0	92.86	69.91	22.95	Both
chr	46	526918	526993	View	Thr	TGT	0	0	96.17	78.89	17.28	Both
chr	47	527004	527087	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both
chr	48	527095	527168	View	Trp	CCA	0	0	61.92	35.87	26.05	Both
chr	49	527188	527263	View	His	GTG	0	0	74.61	57.99	16.62	Both
chr	50	527327	527401	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	51	527407	527481	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	52	527496	527566	View	Cys	GCA	0	0	71.27	44.01	27.26	Both
chr	53	527577	527661	View	Leu	CAA	0	0	60.08	29.99	30.09	Both
chr	54	532092	532165	View	Gly	TCC	0	0	80.08	51.35	28.73	Both
chr	55	737240	737315	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	56	737324	737407	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both
chr	57	737419	737493	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	58	737498	737573	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	59	737588	737668	View	Leu	TAG	0	0	66.65	43.61	23.04	Both
chr	60	737698	737772	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	61	737789	737877	View	Leu	TAA	0	0	71.28	45.92	25.36	Both
chr	62	737881	737954	View	Arg	ACG	0	0	69.97	55.63	14.34	Both
chr	63	737965	738038	View	Pro	TGG	0	0	85.68	64.90	20.78	Both
chr	64	738055	738127	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	65	738148	738240	View	Ser	TGA	0	0	71.21	40.56	30.65	Both
chr	66	738296	738388	View	Ser	TGA	0	0	72.21	40.24	31.97	tRNAscan
chr	67	738409	738485	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	68	738490	738565	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	69	738574	738649	View	Phe	GAA	0	0	92.86	69.91	22.95	Both
chr	70	738659	738731	View	Thr	TGT	0	0	87.87	70.62	17.25	Both
chr	71	738738	738808	View	Trp	CCA	0	0	53.62	27.59	26.03	Both
chr	72	738822	738898	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	73	738907	738981	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	74	738983	739054	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	75	969811	969881	View	Cys	GCA	0	0	71.76	42.92	28.84	Both
chr	76	5217434	5217359	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	77	5217345	5217274	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	78	5217251	5217176	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	79	5217134	5217062	View	Phe	GAA	0	0	84.57	61.64	22.93	Both
chr	80	4873285	4873210	View	Arg	CCG	0	0	62.08	41.29	20.79	Both
chr	81	4657281	4657206	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	82	4657201	4657126	View	Thr	TGT	0	0	95.44	77.54	17.90	Both
chr	83	4657116	4657041	View	His	GTG	0	0	74.61	57.99	16.62	Both
chr	84	4657018	4656938	View	Leu	TAG	0	0	67.96	46.15	21.81	Both
chr	85	4656908	4656834	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	86	4656817	4656729	View	Leu	TAA	0	0	71.28	45.92	25.36	Both
chr	87	4656725	4656652	View	Arg	ACG	0	0	69.97	55.63	14.34	Both
chr	88	4656641	4656568	View	Pro	TGG	0	0	85.68	64.90	20.78	Both
chr	89	4656552	4656480	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	90	4656459	4656383	View	Met	CAT	0	0	83.99	71.47	12.52	Both
chr	91	4656378	4656302	View	Met	CAT	0	0	96.69	71.02	25.67	Both
chr	92	4656284	4656192	View	Ser	TGA	0	0	72.21	40.24	31.97	Both
chr	93	4656164	4656088	View	Met	CAT	0	0	89.08	63.85	25.23	Both
chr	94	4656086	4656011	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	95	4655998	4655923	View	Phe	GAA	0	0	92.86	69.91	22.95	Both
chr	96	4655908	4655833	View	Thr	TGT	0	0	96.17	78.89	17.28	Both
chr	97	4655822	4655747	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	98	4655733	4655663	View	Gly	TCC	0	0	71.78	43.08	28.70	Both
chr	99	4655652	4655576	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	100	4655568	4655494	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	101	4655486	4655396	View	Ser	GCT	0	0	67.93	29.76	38.17	Both
chr	102	4655389	4655318	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	103	4280271	4280198	View	Gly	TCC	0	0	80.08	51.35	28.73	Both
chr	104	4082634	4082561	View	Met	CAT	0	0	88.27	62.52	25.75	Both
chr	105	1255270	1255198	View	Val	GAC	0	0	61.20	42.10	19.10	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.