tRNAscan-SE Analysis of the Bacillus subtilis Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	63	3193566	3193494	View	Ala	GGC	0	0	77.43	56.36	21.07	Both

chr	72	3172087	3172015	View	Ala	TGC	0	0	84.64	67.45	17.19	Both
chr	16	96143	96218	View	Ala	TGC	0	0	92.94	75.72	17.22	Both
chr	2	11550	11625	View	Ala	TGC	0	0	92.94	75.72	17.22	Both
chr	22	166252	166327	View	Ala	TGC	0	0	92.94	75.72	17.22	Both
chr	5	32018	32093	View	Ala	TGC	0	0	92.94	75.72	17.22	Both

chr	14	95953	96029	View	Arg	ACG	0	0	81.43	62.48	18.95	Both
chr	20	166063	166139	View	Arg	ACG	0	0	81.43	62.48	18.95	Both
chr	35	634657	634733	View	Arg	ACG	0	0	81.43	62.48	18.95	Both
chr	70	3172261	3172185	View	Arg	ACG	0	0	81.43	62.48	18.95	Both

chr	62	3544994	3544919	View	Arg	CCG	0	0	66.66	42.97	23.69	Both

chr	86	2002557	2002485	View	Arg	CCT	0	0	69.33	34.96	34.37	Both

chr	85	2898955	2898882	View	Arg	TCT	0	0	83.12	58.16	24.96	Both

chr	17	165753	165824	View	Asn	GTT	0	0	80.02	53.11	26.91	Both
chr	28	528265	528339	View	Asn	GTT	0	0	87.08	58.79	28.29	Both
chr	82	3171191	3171117	View	Asn	GTT	0	0	87.08	58.79	28.29	Both
chr	39	950916	950990	View	Asn	GTT	0	0	88.32	61.39	26.93	Both

chr	38	639952	640028	View	Asp	GTC	0	0	95.80	75.36	20.44	Both
chr	44	951376	951452	View	Asp	GTC	0	0	95.80	75.36	20.44	Both
chr	60	4153994	4153918	View	Asp	GTC	0	0	95.80	75.36	20.44	Both
chr	77	3171635	3171559	View	Asp	GTC	0	0	95.80	75.36	20.44	Both

chr	52	952115	952185	View	Cys	GCA	0	0	67.07	40.34	26.73	Both

chr	57	2563122	2563192	View	Gln	TTG	0	0	65.47	42.92	22.55	Both
chr	50	951914	951985	View	Gln	TTG	0	0	67.67	42.59	25.08	Both
chr	27	194536	194610	View	Gln	TTG	0	0	68.29	43.19	25.10	Both
chr	31	528547	528621	View	Gln	TTG	0	0	75.97	50.87	25.10	Both

chr	23	194197	194268	View	Glu	TTC	0	0	48.71	37.90	10.81	Eufind
chr	30	528464	528535	View	Glu	TTC	0	0	70.15	45.10	25.05	Both
chr	41	951122	951193	View	Glu	TTC	0	0	70.15	45.10	25.05	Both
chr	59	4154147	4154076	View	Glu	TTC	0	0	70.15	45.10	25.05	Both
chr	7	70265	70336	View	Glu	TTC	0	0	70.15	45.10	25.05	Both
chr	84	3170997	3170926	View	Glu	TTC	0	0	70.15	45.10	25.05	Both

chr	12	95769	95843	View	Gly	GCC	0	0	94.93	73.18	21.75	Both
chr	19	165958	166032	View	Gly	GCC	0	0	94.93	73.18	21.75	Both
chr	51	952035	952109	View	Gly	GCC	0	0	94.93	73.18	21.75	Both
chr	68	3172445	3172371	View	Gly	GCC	0	0	94.93	73.18	21.75	Both

chr	36	634747	634820	View	Gly	TCC	0	0	78.55	52.04	26.51	Both
chr	55	966402	966475	View	Gly	TCC	0	0	78.55	52.04	26.51	Both
chr	80	3171367	3171294	View	Gly	TCC	0	0	81.36	57.62	23.74	Both

chr	49	951829	951904	View	His	GTG	0	0	72.51	51.31	21.20	Both
chr	79	3171453	3171378	View	His	GTG	0	0	74.51	53.31	21.20	Both

chr	81	3171278	3171202	View	Ile	GAT	0	0	102.00	81.19	20.81	Both
chr	1	11462	11538	View	Ile	GAT	0	0	102.39	81.84	20.55	Both
chr	4	31930	32006	View	Ile	GAT	0	0	102.39	81.84	20.55	Both

chr	54	952547	952628	View	Leu	CAA	0	0	55.51	31.55	23.96	Both

chr	67	3172537	3172451	View	Leu	CAG	0	0	72.49	46.11	26.38	Both

chr	34	528897	528983	View	Leu	GAG	0	0	53.73	26.87	26.86	Both

chr	13	95858	95943	View	Leu	TAA	0	0	68.21	39.98	28.23	Both
chr	69	3172356	3172271	View	Leu	TAA	0	0	68.21	39.98	28.23	Both
chr	53	952193	952281	View	Leu	TAA	0	0	76.51	48.25	28.26	Both

chr	11	95646	95728	View	Leu	TAG	0	0	69.29	46.11	23.18	Both
chr	33	528735	528816	View	Leu	TAG	0	0	73.07	48.50	24.57	Both

chr	10	95564	95639	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	32	528648	528723	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	58	4154232	4154157	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	66	3172623	3172548	View	Lys	TTT	0	0	98.67	74.23	24.44	Both

chr	6	70179	70255	View	Met	CAT	0	0	83.99	71.47	12.52	Both
chr	73	3171994	3171918	View	Met	CAT	0	0	83.99	71.47	12.52	Both
chr	37	639815	639891	View	Met	CAT	0	0	90.17	64.11	26.06	Both
chr	43	951288	951364	View	Met	CAT	0	0	90.17	64.11	26.06	Both
chr	76	3171723	3171647	View	Met	CAT	0	0	90.17	64.11	26.06	Both
chr	74	3171915	3171839	View	Met	CAT	0	0	97.54	71.87	25.67	Both

chr	61	4153882	4153810	View	Phe	GAA	0	0	89.60	68.94	20.66	Both
chr	45	951465	951540	View	Phe	GAA	0	0	91.60	76.05	15.55	Both
chr	78	3171546	3171471	View	Phe	GAA	0	0	97.89	77.22	20.67	Both

chr	15	96057	96133	View	Pro	TGG	0	0	94.72	72.38	22.34	Both
chr	21	166167	166243	View	Pro	TGG	0	0	94.72	72.38	22.34	Both
chr	71	3172169	3172093	View	Pro	TGG	0	0	94.72	72.38	22.34	Both

chr	29	528344	528434	View	Ser	GCT	0	0	71.43	35.25	36.18	Both
chr	83	3171113	3171023	View	Ser	GCT	0	0	72.43	36.57	35.86	Both

chr	40	950996	951087	View	Ser	GGA	0	0	64.16	28.51	35.65	Both

chr	3	22290	22382	View	Ser	TGA	0	0	71.03	39.22	31.81	tRNAscan
chr	75	3171832	3171741	View	Ser	TGA	0	0	74.88	40.35	34.53	Both

chr	18	165829	165901	View	Thr	GGT	0	0	75.20	48.62	26.58	Both

chr	46	951546	951618	View	Thr	TGT	0	0	76.44	70.72	5.72	Both
chr	25	194352	194424	View	Thr	TGT	0	0	82.73	71.89	10.84	Both
chr	65	3172736	3172661	View	Thr	TGT	0	0	91.03	80.17	10.86	Both
chr	9	95452	95527	View	Thr	TGT	0	0	91.03	80.17	10.86	Both

chr	48	951731	951804	View	Trp	CCA	0	0	65.41	43.81	21.60	Both

chr	26	194447	194531	View	Tyr	GTA	0	0	78.86	49.23	29.63	Both
chr	47	951641	951725	View	Tyr	GTA	0	0	78.86	49.23	29.63	Both

chr	56	1262101	1262173	View	Val	GAC	0	0	71.64	42.78	28.86	Both

chr	42	951203	951278	View	Val	TAC	0	0	90.98	75.54	15.44	Both
chr	24	194272	194347	View	Val	TAC	0	0	96.46	76.75	19.71	Both
chr	64	3172844	3172769	View	Val	TAC	0	0	96.46	76.75	19.71	Both
chr	8	95372	95447	View	Val	TAC	0	0	96.46	76.75	19.71	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.