tRNAscan-SE Analysis of the Bacillus licheniformis DSM 13 Genome
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| Predicted tRNA Secondary Structures |
Click on "View tRNA" buttons to view 2-D tRNA structures
Cove-predicted tRNA secondary structures rendered by
NAVIEW (c) 1988 Robert E. Bruccoleri
chr.trna50 (3143658-3143586) Length: 73 bp
Type: Ala Anticodon: GGC at 34-36 (3143625-3143623) Score: 77.59
Seq: GGGGCATTAGCTCAGCTGGGAGAGCGCTACACTGGCAGTGTAGAGGtCAGCGGTTCGAGCCCGCTATGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna58 (3116853-3116781) Length: 73 bp
Type: Ala Anticodon: TGC at 34-36 (3116820-3116818) Score: 84.64
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna2 (11446-11521) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (11479-11481) Score: 92.94
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna5 (36144-36219) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (36177-36179) Score: 92.94
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna22 (611478-611554) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (611512-611514) Score: 81.43
Seq: GCGCCCGTAGCTCAATTGGAtAGAGCGTTTGACTACGGATCAAAAGGtTAGGGGTTCGACTCCTCTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna56 (3117021-3116945) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (3116987-3116985) Score: 81.43
Seq: GCGCCCGTAGCTCAATTGGAtAGAGCGTTTGACTACGGATCAAAAGGtTAGGGGTTCGACTCCTCTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna49 (3538357-3538282) Length: 76 bp
Type: Arg Anticodon: CCG at 35-37 (3538323-3538321) Score: 61.22
Seq: GCGCTCGTAGCTCAGCTGGAtAGAGCGGTGGTTTCCGGTACCACGTCTGcCGGGGGTTCGAATCCCTCCGAGCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.......>>>>>.......<<<<<<<<<<<<.
chr.trna43 (2176780-2176853) Length: 74 bp
Type: Arg Anticodon: CCT at 35-37 (2176814-2176816) Score: 76.22
Seq: GTCCCAGTAGCTCAGGTGGAtAGAGCAACAGCCTCCTAAGCTGTGTGtCGGGAGTTCGAATCTCTCCTGGGACG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna71 (2866237-2866161) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (2866203-2866201) Score: 83.73
Seq: GTCCCAGTAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTCGGtCGGGAGTTCGAATCTCTCCTGGGACGTCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna15 (572074-572148) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (572106-572108) Score: 87.08
Seq: TCCACAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGtCGCAGGTTCGAATCCTGCCTGTGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna26 (925729-925803) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (925761-925763) Score: 89.95
Seq: TCCGCAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGtCGCAGGTTCGAATCCTGCCTGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna68 (3115915-3115841) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (3115883-3115881) Score: 89.95
Seq: TCCGCAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGtCGCAGGTTCGAATCCTGCCTGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna8 (163048-163122) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (163080-163082) Score: 89.95
Seq: TCCGCAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGtCGCAGGTTCGAATCCTGCCTGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna25 (616831-616907) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (616865-616867) Score: 95.80
Seq: GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAGGtCGCGGGTTCGAGTCCCGTCCGGACCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna31 (926296-926372) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (926330-926332) Score: 95.80
Seq: GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAGGtCGCGGGTTCGAGTCCCGTCCGGACCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna47 (4187366-4187290) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (4187332-4187330) Score: 95.80
Seq: GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAGGtCGCGGGTTCGAGTCCCGTCCGGACCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna63 (3116353-3116277) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (3116319-3116317) Score: 95.80
Seq: GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAGGtCGCGGGTTCGAGTCCCGTCCGGACCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna39 (927022-927092) Length: 71 bp
Type: Cys Anticodon: GCA at 33-35 (927054-927056) Score: 67.07
Seq: GGCGGCATAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTTTAtCCCCGGTTCGAATCCGGGTGTCGCCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna44 (2559110-2559181) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (2559142-2559144) Score: 68.66
Seq: TGGGCTATAGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTGACgCGCTGGTTCGAATCCAGCTAGCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna14 (176781-176852) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (176813-176815) Score: 70.30
Seq: TGGGCTATAGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTCATgCGCTGGTTCGAATCCAGCTAGCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna37 (926809-926880) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (926841-926843) Score: 70.30
Seq: TGGGCTATAGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTCATgCGCTGGTTCGAATCCAGCTAGCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna18 (572354-572428) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (572386-572388) Score: 75.97
Seq: TGGGCTATAGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTCATgCGTTGGTTCGAATCCAGCTAGCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna17 (572270-572341) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (572303-572305) Score: 71.01
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna46 (4187526-4187455) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (4187493-4187491) Score: 71.01
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna7 (74834-74905) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (74867-74869) Score: 71.01
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna70 (3115736-3115662) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (3115703-3115701) Score: 71.62
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCATCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna10 (176252-176326) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (176285-176287) Score: 79.30
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna28 (925916-925990) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (925949-925951) Score: 79.30
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna55 (3117103-3117032) Length: 72 bp
Type: Gly Anticodon: GCC at 33-35 (3117071-3117069) Score: 86.63
Seq: GCGGAAGTAGTTCAGTGGTAGAACACCACCTTGCCAAGGTGGGGGtCGCGGGTTCGAATCCCGTCTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna38 (926934-927008) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (926966-926968) Score: 94.93
Seq: GCGGAAGTAGTTCAGTGGTAGAACACCACCTTGCCAAGGTGGGGGtCGCGGGTTCGAATCCCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna23 (611567-611640) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (611599-611601) Score: 78.55
Seq: GCGGGTGTAGTTTAGTGGTAAAACCTCAGCCTTCCAAGCTGATGtCGTGAGTTCGATTCTCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna42 (953465-953538) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (953497-953499) Score: 81.36
Seq: GCGGGTGTAGTTTAGTGGTAAAACCTCAGCCTTCCAAGCTGATGtCGTGGGTTCGATTCCCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna66 (3116084-3116011) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (3116052-3116050) Score: 81.36
Seq: GCGGGTGTAGTTTAGTGGTAAAACCTCAGCCTTCCAAGCTGATGtCGTGGGTTCGATTCCCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna36 (926728-926800) Length: 73 bp
Type: His Anticodon: GTG at 34-36 (926761-926763) Score: 64.21
Seq: GCGGTTGTGGCGAAGTGGTtAACGCACCAGATTGTGGCTCTGGCACtCGTGGGTTCGATTCCCATCAATCGCC
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna65 (3116168-3116093) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (3116135-3116133) Score: 79.15
Seq: GCGGTTGTGGCGAAGTGGTtAACGCACCAGATTGTGGCTCTGGCATtCGTGGGTTCGATTCCCATCAACCGCCCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna67 (3115998-3115922) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (3115964-3115962) Score: 102.00
Seq: GGGCCTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCGAGTCCATTCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna1 (11358-11434) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (11392-11394) Score: 102.39
Seq: GGGCCTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCGAGTCCACTCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna4 (36056-36132) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (36090-36092) Score: 102.39
Seq: GGGCCTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCGAGTCCACTCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna41 (927206-927290) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (927240-927242) Score: 60.81
Seq: GCCGGTGTGGCGGAATTGGCaGACGCGCACGACTCAAAATCGTGTTCCTTCGGGAGTGTCGGTTCGACCCCGACCACCGGTATCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna54 (3117203-3117119) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (3117169-3117167) Score: 62.54
Seq: GCGGATGTGGCGGAATTGGCaGACGCGCTAGAATCAGGCTCTAGTGTCTTTTAaAGACGTGGGGGTTCAAGTCCCTTCATCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna21 (572628-572711) Length: 84 bp
Type: Leu Anticodon: GAG at 34-36 (572661-572663) Score: 53.11
Seq: GCGGTCGTGGCGGAATGGCaGACGCGCTAGGTTGAGGGCCTAGTGGGTGAATaACCCGTGGAGGTTCAAGTCCTCTCGGCCGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna40 (927103-927191) Length: 89 bp
Type: Leu Anticodon: TAA at 35-37 (927137-927139) Score: 76.51
Seq: GCCGGGGTGGTGGAATTGGCaGACACACAGGACTTAAAATCCTGCGGTAGGTGACTACCGTGCCGGTTCAAGTCCGGCCCTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna20 (572525-572607) Length: 83 bp
Type: Leu Anticodon: TAG at 35-37 (572559-572561) Score: 69.61
Seq: GCGGGTGTGGCGGAATTGGCaGACGCGCTAGACTTAGGATCTAGTGTCTTTACGGCGTGGGGGTTCGAGTCCCTTCACCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>....<<...>>>>>.......<<<<<<<<<<<<.
chr.trna19 (572437-572512) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (572470-572472) Score: 98.67
Seq: GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCGAAGGTTCGAGTCCTTCATGGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna45 (4187609-4187534) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (4187576-4187574) Score: 98.67
Seq: GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCGAAGGTTCGAGTCCTTCATGGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna53 (3117285-3117210) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (3117252-3117250) Score: 98.67
Seq: GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCGAAGGTTCGAGTCCTTCATGGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna6 (74750-74823) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (74784-74786) Score: 75.69
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTACGGTTCATACCCGTGAGGtCGGGGGTTCGATCCCCTCCGCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna59 (3116755-3116682) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (3116721-3116719) Score: 78.06
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTACGGTTCATACCCGTGAGGtCGGGGGTTCGATTCCCTCCGCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna24 (616713-616789) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (616747-616749) Score: 90.17
Seq: CGCGGGGTGGAGCAGTTcGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
chr.trna30 (926205-926281) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (926239-926241) Score: 90.17
Seq: CGCGGGGTGGAGCAGTTcGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
chr.trna62 (3116475-3116399) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (3116441-3116439) Score: 90.17
Seq: CGCGGGGTGGAGCAGTTcGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
chr.trna60 (3116676-3116600) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (3116642-3116640) Score: 97.54
Seq: GGACCTTTAGCTCAGTTGGTtAGAGCAGACGGCTCATAACCGTCCGGtCGTAGGTTCGAGTCCTACAAGGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna48 (4187263-4187191) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (4187230-4187228) Score: 89.60
Seq: GGCTCGGTAGCTCAGTTGGTAGAGCAACGGACTGAAAATCCGTGTGtCGGCGGTTCGATTCCGTCCCGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna32 (926383-926458) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (926416-926418) Score: 97.89
Seq: GGCTCGGTAGCTCAGTTGGTAGAGCAACGGACTGAAAATCCGTGTGtCGGCGGTTCGATTCCGTCCCGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna64 (3116266-3116191) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (3116233-3116231) Score: 97.89
Seq: GGCTCGGTAGCTCAGTTGGTAGAGCAACGGACTGAAAATCCGTGTGtCGGCGGTTCGATTCCGTCCCGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna57 (3116936-3116860) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (3116902-3116900) Score: 94.72
Seq: CGGGAAGTAGCTCAGCTtGGTAGAGCACATGGTTTGGGACCATGGGGtCGCAGGTTCGAATCCTGTCTTCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna16 (572151-572241) Length: 91 bp
Type: Ser Anticodon: GCT at 35-37 (572185-572187) Score: 71.43
Seq: GGAGAAGTACTCAAGTGGCtgAAGAGGCGCCCCTGCTAAGGGTGTAGGTCGCGTAAGCGGCGCGAGGGTTCAAATCCCTCCTTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna69 (3115839-3115749) Length: 91 bp
Type: Ser Anticodon: GCT at 35-37 (3115805-3115803) Score: 71.43
Seq: GGAGAAGTACTCAAGTGGCtgAAGAGGCGCCCCTGCTAAGGGTGTAGGTCGCGTAAGCGGCGCGAGGGTTCAAATCCCTCCTTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna27 (925810-925901) Length: 92 bp
Type: Ser Anticodon: GGA at 35-37 (925844-925846) Score: 63.95
Seq: GGAGAGCTGTCCGAGTGGTcgAAGGAGCACGATTGGAAATCGTGTAGGCGGCCAACGCCGTCTCAAGGGTTCGAATCCCTTGCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>....<<<<<<<.>>>>>.......<<<<<<<<<<<<....
chr.trna3 (26352-26444) Length: 93 bp
Type: Ser Anticodon: TGA at 37-39 (26388-26390) Score: 72.49
Seq: GGAGGAATACCCAAGTCtGGCtgAAGGGATCGGTCTTGAAAACCGACAGGGGTGTCAAAGCCCGCGGGGGTTCGAATCCCTCTTCCTCCGCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna61 (3116592-3116500) Length: 93 bp
Type: Ser Anticodon: TGA at 37-39 (3116556-3116554) Score: 72.49
Seq: GGAGGAATACCCAAGTCtGGCtgAAGGGATCGGTCTTGAAAACCGACAGGGGTGTCAAAGCCCGCGGGGGTTCGAATCCCTCTTCCTCCGCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna52 (3117442-3117367) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (3117409-3117407) Score: 85.36
Seq: GCCGGTGTAGCTCAATTGGTAGAGCAACTGAATCGTAATCAGTAGGtTGGGGGTTCAAGTCCTCTTGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna9 (163125-163197) Length: 73 bp
Type: Thr Anticodon: GGT at 34-36 (163158-163160) Score: 75.20
Seq: GCTTCCATAGCTCAGCAGGTAGAGCACTTCCATGGTAAGGAAGAGGtCAGCGGTTCGAGCCCGCTTGGAAGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna12 (176611-176683) Length: 73 bp
Type: Thr Anticodon: TGT at 34-36 (176644-176646) Score: 82.36
Seq: GCCGGTCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTGGGGGTTCAAGTCCTCTGGCCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna33 (926462-926534) Length: 73 bp
Type: Thr Anticodon: TGT at 34-36 (926495-926497) Score: 82.36
Seq: GCCGGTCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTGGGGGTTCAAGTCCTCTGGCCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna35 (926634-926707) Length: 74 bp
Type: Trp Anticodon: CCA at 33-35 (926666-926668) Score: 71.01
Seq: AGGGGCATAGTTTAACGGTAGAACAGAGGTCTCCAAAACCTCCGGTGTGGGTTCGATTCCTACTGCCCCTGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna13 (176692-176776) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (176726-176728) Score: 80.73
Seq: GGAGGGGTAGCGAAGTGGCtaAACGCGGCGGACTGTAAATCCGCTCCCTCAGGGTtCGGCGGTTCGAATCCGTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna34 (926542-926626) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (926576-926578) Score: 80.73
Seq: GGAGGGGTAGCGAAGTGGCtaAACGCGGCGGACTGTAAATCCGCTCCCTCAGGGTtCGGCGGTTCGAATCCGTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna72 (1300661-1300589) Length: 73 bp
Type: Val Anticodon: GAC at 34-36 (1300628-1300626) Score: 71.64
Seq: GATTCCGTAGCTCAGCTGGGAGAGCGCTACCTTGACAGGGTAGAGGtCGCTGGTTCGAGCCCAGTCGGAATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna11 (176477-176552) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (176510-176512) Score: 95.52
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGATCCCGTCATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna29 (926108-926183) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (926141-926143) Score: 95.52
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGATCCCGTCATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna51 (3117533-3117458) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (3117500-3117498) Score: 95.52
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGATCCCGTCATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan.
Please email lowe@soe.ucsc.edu
with any questions and comments. To submit corrections, please use our
Bug and Request Tracking System.