tRNAscan-SE Analysis of the Bacillus licheniformis DSM 13 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCATTAGCTCAGCTGGGAGAGCGCTACACTGGCAGTGTAGAG...........GtCAGCGGTTCGAGCCCGCTATGCTCCA... chr.trna50-AlaGGC Sc: 77.59  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCACCA chr.trna5-AlaTGC Sc: 92.94  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCACCA chr.trna2-AlaTGC Sc: 92.94  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... chr.trna58-AlaTGC Sc: 84.64  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...................>>>>>.......<<<<<.<<<<<<<....
GCGCCCGTAGCTCAATTGGAtAGAGCGTTTGACTACGGATCAAAAG..............GtTAGGGGTTCGACTCCTCT.CGGGCGCGCCA chr.trna56-ArgACG Sc: 81.43  
GCGCCCGTAGCTCAATTGGAtAGAGCGTTTGACTACGGATCAAAAG..............GtTAGGGGTTCGACTCCTCT.CGGGCGCGCCA chr.trna22-ArgACG Sc: 81.43  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...................>>>>>.......<<<<<.<<<<<<<....
GCGCTCGTAGCTCAGCTGGAtAGAGCGGTGGTTTCCGGTACCACG.TCT...........GcCGGGGGTTCGAATCCCTC.CGAGCGCG... chr.trna49-ArgCCG Sc: 61.22  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...................>>>>>.......<<<<<.<<<<<<<....
GTCCCAGTAGCTCAGGTGGAtAGAGCAACAGCCTCCTAAGCTGTGT..............GtCGGGAGTTCGAATCTCTC.CTGGGACG... chr.trna43-ArgCCT Sc: 76.22  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...................>>>>>.......<<<<<.<<<<<<<....
GTCCCAGTAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTCG..............GtCGGGAGTTCGAATCTCTC.CTGGGACGTCA chr.trna71-ArgTCT Sc: 83.73  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCGCAGTAGCTCAGTGGTA.GAGCTATCGGCTGTTAACCGATCG...........GtCGCAGGTTCGAATCCTGCCTGCGGAGCCA chr.trna8-AsnGTT Sc: 89.95  
TCCGCAGTAGCTCAGTGGTA.GAGCTATCGGCTGTTAACCGATCG...........GtCGCAGGTTCGAATCCTGCCTGCGGAGCCA chr.trna68-AsnGTT Sc: 89.95  
TCCGCAGTAGCTCAGTGGTA.GAGCTATCGGCTGTTAACCGATCG...........GtCGCAGGTTCGAATCCTGCCTGCGGAGCCA chr.trna26-AsnGTT Sc: 89.95  
TCCACAGTAGCTCAGTGGTA.GAGCTATCGGCTGTTAACCGATCG...........GtCGCAGGTTCGAATCCTGCCTGTGGAGCCA chr.trna15-AsnGTT Sc: 87.08  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGTCCCGTCCGGACCGCCA chr.trna63-AspGTC Sc: 95.80  
GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGTCCCGTCCGGACCGCCA chr.trna47-AspGTC Sc: 95.80  
GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGTCCCGTCCGGACCGCCA chr.trna31-AspGTC Sc: 95.80  
GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGTCCCGTCCGGACCGCCA chr.trna25-AspGTC Sc: 95.80  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
GGCGGCATAGCCAAGTGGTA.AGGCAGAGGTCTGCAAAACCTTT...........AtCCCCGGTTCGAATCCGGG.TGTCGCCT... chr.trna39-CysGCA Sc: 67.07  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGCTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTCA...........TgCGTTGGTTCGAATCCAGCTAGCCCAGCCA chr.trna18-GlnTTG Sc: 75.97  
TGGGCTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTCA...........TgCGCTGGTTCGAATCCAGCTAGCCCAG... chr.trna37-GlnTTG Sc: 70.30  
TGGGCTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTCA...........TgCGCTGGTTCGAATCCAGCTAGCCCAG... chr.trna14-GlnTTG Sc: 70.30  
TGGGCTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTGA...........CgCGCTGGTTCGAATCCAGCTAGCCCAG... chr.trna44-GlnTTG Sc: 68.66  



Glu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCACCA chr.trna28-GluTTC Sc: 79.30  
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCACCA chr.trna10-GluTTC Sc: 79.30  
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCATCA chr.trna70-GluTTC Sc: 71.62  
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCA... chr.trna7-GluTTC Sc: 71.01  
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCA... chr.trna46-GluTTC Sc: 71.01  
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCA... chr.trna17-GluTTC Sc: 71.01  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGGAAGTAGTTCAGTGGTA.GAACACCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAATCCCGT.CTTCCGCTCCA chr.trna38-GlyGCC Sc: 94.93  
GCGGAAGTAGTTCAGTGGTA.GAACACCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAATCCCGT.CTTCCGCT... chr.trna55-GlyGCC Sc: 86.63  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTAGTTTAGTGGTA.AAACCTCAGCCTTCCAAGCTGAT............GtCGTGGGTTCGATTCCCAT.CACCCGCTCCA chr.trna66-GlyTCC Sc: 81.36  
GCGGGTGTAGTTTAGTGGTA.AAACCTCAGCCTTCCAAGCTGAT............GtCGTGGGTTCGATTCCCAT.CACCCGCTCCA chr.trna42-GlyTCC Sc: 81.36  
GCGGGTGTAGTTTAGTGGTA.AAACCTCAGCCTTCCAAGCTGAT............GtCGTGAGTTCGATTCTCAT.CACCCGCTCCA chr.trna23-GlyTCC Sc: 78.55  



His tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGTTGTGGCGAAGTGGTtA.ACGCACCAGATTGTGGCTCTGGCA...........TtCGTGGGTTCGATTCCCATCAACCGCCCCA chr.trna65-HisGTG Sc: 79.15  
GCGGTTGTGGCGAAGTGGTtA.ACGCACCAGATTGTGGCTCTGGCA...........CtCGTGGGTTCGATTCCCATCAATCGCC... chr.trna36-HisGTG Sc: 64.21  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCGAGTCCACTCAGGCCCACCA chr.trna4-IleGAT Sc: 102.39  
GGGCCTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCGAGTCCACTCAGGCCCACCA chr.trna1-IleGAT Sc: 102.39  
GGGCCTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCGAGTCCATTCAGGCCCACCA chr.trna67-IleGAT Sc: 102.00  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGTCGTGGCGGAAT.GGCaG.ACGCGCTAGGTTGAGGGCCTAGT.GGGT.GAATa......ACCCGTGGAGGTTCAAGTCCTCT.CGGCCGCA... chr.trna21-LeuGAG Sc: 53.11  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGATGTGGCGGAATTGGCaG.ACGCGCTAGAATCAGGCTCTAGT.GTCT.TTTAa......AGACGTGGGGGTTCAAGTCCCTT.CATCCGCA... chr.trna54-LeuCAG Sc: 62.54  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>..............<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTGGCGGAATTGGCaG.ACGCGCTAGACTTAGGATCTAGTGTCT..TTAC........GGCGTGGGGGTTCGAGTCCCTT.CACCCGCA... chr.trna20-LeuTAG Sc: 69.61  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGTGTGGCGGAATTGGCaG.ACGCGCACGACTCAAAATCGTGT.TCCTT..........CGGGAGTGTCGGTTCGACCCCGAC.CACCGGTATCA chr.trna41-LeuCAA Sc: 60.81  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>..........<<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTGGTGGAATTGGCaG.ACACACAGGACTTAAAATCCTGC.GGTAGGTGA......CTACCGTGCCGGTTCAAGTCCGGC.CCTCGGCACCA chr.trna40-LeuTAA Sc: 76.51  



Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCGAAGGTTCGAGTCCTTCATGGCTCACCA chr.trna53-LysTTT Sc: 98.67  
GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCGAAGGTTCGAGTCCTTCATGGCTCACCA chr.trna45-LysTTT Sc: 98.67  
GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCGAAGGTTCGAGTCCTTCATGGCTCACCA chr.trna19-LysTTT Sc: 98.67  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCTTTAGCTCAGTT.GGTtAGAGCAGACGGCTCATAACCGTCCG...........GtCGTAGGTTCGAGTCCTACAAGGTCCACCA chr.trna60-MetCAT Sc: 97.54  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGTTcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGCAGGTTCAAATCCTGCCCCCGCAACCA chr.trna62-MetCAT Sc: 90.17  
CGCGGGGTGGAGCAGTTcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGCAGGTTCAAATCCTGCCCCCGCAACCA chr.trna30-MetCAT Sc: 90.17  
CGCGGGGTGGAGCAGTTcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGCAGGTTCAAATCCTGCCCCCGCAACCA chr.trna24-MetCAT Sc: 90.17  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGTGTAGCTCAGCT.GGCtAGAGCGTACGGTTCATACCCGTGAG...........GtCGGGGGTTCGATTCCCTCCGCCGCTA... chr.trna59-MetCAT Sc: 78.06  
GGCGGTGTAGCTCAGCT.GGCtAGAGCGTACGGTTCATACCCGTGAG...........GtCGGGGGTTCGATCCCCTCCGCCGCTA... chr.trna6-MetCAT Sc: 75.69  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTCGGTAGCTCAGTTGGTAGAGCAACGGACTGAAAATCCGTGT...........GtCGGCGGTTCGATTCCGTCCCGAGCCACCA chr.trna64-PheGAA Sc: 97.89  
GGCTCGGTAGCTCAGTTGGTAGAGCAACGGACTGAAAATCCGTGT...........GtCGGCGGTTCGATTCCGTCCCGAGCCACCA chr.trna32-PheGAA Sc: 97.89  
GGCTCGGTAGCTCAGTTGGTAGAGCAACGGACTGAAAATCCGTGT...........GtCGGCGGTTCGATTCCGTCCCGAGCCA... chr.trna48-PheGAA Sc: 89.60  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGAAGTAGCTCAGCTtGGTAGAGCACATGGTTTGGGACCATGGG...........GtCGCAGGTTCGAATCCTGTCTTCCCGACCA chr.trna57-ProTGG Sc: 94.72  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGCTGTCCGAGT..GGTcgA.AGGAGCACGATTGGAAATCGTGT.AGGCGGCCAACGCCGTCTCAAGGGTTCGAATCCCTT..GCTCTCCGCCA chr.trna27-SerGGA Sc: 63.95  


>>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGGAATACCCAAGTCtGGCtgA.AGGGATCGGTCTTGAAAACCGACAGGGGTG.TCAA.AGCCCGCGGGGGTTCGAATCCCTC..TTCCTCCGCCA chr.trna61-SerTGA Sc: 72.49  
GGAGGAATACCCAAGTCtGGCtgA.AGGGATCGGTCTTGAAAACCGACAGGGGTG.TCAA.AGCCCGCGGGGGTTCGAATCCCTC..TTCCTCCGCCA chr.trna3-SerTGA Sc: 72.49  


>>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>......<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAAGTACTCAAGT..GGCtgA.AGAGGCGCCCCTGCTAAGGGTGTAGGTCGC.GTAA.GCGGCGCGAGGGTTCAAATCCCTC..CTTCTCCGCCA chr.trna69-SerGCT Sc: 71.43  
GGAGAAGTACTCAAGT..GGCtgA.AGAGGCGCCCCTGCTAAGGGTGTAGGTCGC.GTAA.GCGGCGCGAGGGTTCAAATCCCTC..CTTCTCCGCCA chr.trna16-SerGCT Sc: 71.43  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTTCCATAGCTCAGCAGGTAGAGCACTTCCATGGTAAGGAAGAG...........GtCAGCGGTTCGAGCCCGCTTGGAAGCT... chr.trna9-ThrGGT Sc: 75.20  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGTGTAGCTCAATTGGTAGAGCAACTGAATCGTAATCAGTAG...........GtTGGGGGTTCAAGTCCTCTTGCCGGCACCA chr.trna52-ThrCGT Sc: 85.36  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGTCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtTGGGGGTTCAAGTCCTCTGGCCGGCA... chr.trna33-ThrTGT Sc: 82.36  
GCCGGTCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtTGGGGGTTCAAGTCCTCTGGCCGGCA... chr.trna12-ThrTGT Sc: 82.36  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGGGGCATAGTTTAACGGTA.GAACAGAGGTCTCCAAAACCTCCG...........GTGTGGGTTCGATTCCTACTGCCCCTGCCA chr.trna35-TrpCCA Sc: 71.01  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGGTAGCGAAGTGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCCTCA.....GGGTtCGGCGGTTCGAATCCGTC.CCCCTCCACCA chr.trna34-TyrGTA Sc: 80.73  
GGAGGGGTAGCGAAGTGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCCTCA.....GGGTtCGGCGGTTCGAATCCGTC.CCCCTCCACCA chr.trna13-TyrGTA Sc: 80.73  



Val tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GATTCCGTAGCTCAGCTGGGAGAGCGCTACCTTGACAGGGTAGAG...........GtCGCTGGTTCGAGCCCAGTCGGAATCA... chr.trna72-ValGAC Sc: 71.64  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCGGCGGTTCGATCCCGTCATCCTCCACCA chr.trna51-ValTAC Sc: 95.52  
GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCGGCGGTTCGATCCCGTCATCCTCCACCA chr.trna29-ValTAC Sc: 95.52  
GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCGGCGGTTCGATCCCGTCATCCTCCACCA chr.trna11-ValTAC Sc: 95.52

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.