tRNAscan-SE Analysis of the Bacillus licheniformis ATCC 14580 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	50	3143484	3143412	View	Ala	GGC	0	0	77.59	56.09	21.50	Both

chr	58	3116676	3116604	View	Ala	TGC	0	0	84.64	67.45	17.19	Both
chr	2	11641	11716	View	Ala	TGC	0	0	85.87	74.19	11.68	Both
chr	5	36344	36419	View	Ala	TGC	0	0	92.94	75.72	17.22	Both

chr	22	611686	611762	View	Arg	ACG	0	0	81.43	62.48	18.95	Both
chr	56	3116844	3116768	View	Arg	ACG	0	0	81.43	62.48	18.95	Both

chr	49	3538188	3538113	View	Arg	CCG	0	0	61.22	38.74	22.48	Both

chr	43	2175934	2176007	View	Arg	CCT	0	0	76.22	50.45	25.77	Both

chr	71	2865376	2865300	View	Arg	TCT	0	0	83.73	58.76	24.97	Both

chr	15	572258	572332	View	Asn	GTT	0	0	87.08	58.79	28.29	Both
chr	26	925436	925510	View	Asn	GTT	0	0	89.95	64.28	25.67	Both
chr	68	3115738	3115664	View	Asn	GTT	0	0	89.95	64.28	25.67	Both

chr	25	617041	617117	View	Asp	GTC	0	0	95.80	75.36	20.44	Both
chr	31	926003	926079	View	Asp	GTC	0	0	95.80	75.36	20.44	Both
chr	47	4187251	4187175	View	Asp	GTC	0	0	95.80	75.36	20.44	Both
chr	63	3116176	3116100	View	Asp	GTC	0	0	95.80	75.36	20.44	Both

chr	39	926729	926799	View	Cys	GCA	0	0	67.07	40.34	26.73	Both

chr	44	2558249	2558323	View	Gln	TTG	0	0	57.71	30.11	27.60	Eufind
chr	14	176973	177044	View	Gln	TTG	0	0	70.30	43.66	26.64	Both
chr	37	926516	926587	View	Gln	TTG	0	0	70.30	43.66	26.64	Both
chr	18	572538	572612	View	Gln	TTG	0	0	75.97	50.87	25.10	Both

chr	10	176445	176518	View	Glu	TTC	0	0	66.32	43.99	22.33	Eufind
chr	17	572454	572525	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	46	4187411	4187340	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	7	75033	75104	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	70	3115559	3115485	View	Glu	TTC	0	0	71.62	46.55	25.07	Both
chr	28	925623	925697	View	Glu	TTC	0	0	79.30	54.23	25.07	Both

chr	55	3116926	3116855	View	Gly	GCC	0	0	86.63	64.90	21.73	Both
chr	38	926641	926715	View	Gly	GCC	0	0	94.93	73.18	21.75	Both

chr	23	611775	611848	View	Gly	TCC	0	0	78.55	52.04	26.51	Both
chr	42	953171	953244	View	Gly	TCC	0	0	81.36	57.62	23.74	Both
chr	66	3115907	3115834	View	Gly	TCC	0	0	81.36	57.62	23.74	Both

chr	36	926435	926507	View	His	GTG	0	0	64.21	43.03	21.18	Both
chr	65	3115991	3115916	View	His	GTG	0	0	79.15	55.88	23.27	Both

chr	67	3115821	3115745	View	Ile	GAT	0	0	102.00	81.19	20.81	Both
chr	1	11553	11629	View	Ile	GAT	0	0	102.39	81.84	20.55	Both
chr	4	36256	36332	View	Ile	GAT	0	0	102.39	81.84	20.55	Both

chr	41	926913	926997	View	Leu	CAA	0	0	60.81	31.34	29.47	Both

chr	54	3117026	3116942	View	Leu	CAG	0	0	62.54	36.78	25.76	Both

chr	21	572812	572895	View	Leu	GAG	0	0	53.11	26.27	26.84	Both

chr	40	926810	926898	View	Leu	TAA	0	0	76.51	48.25	28.26	Both

chr	20	572709	572791	View	Leu	TAG	0	0	69.61	47.97	21.64	Both

chr	19	572621	572696	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	45	4187494	4187419	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	53	3117108	3117033	View	Lys	TTT	0	0	98.67	74.23	24.44	Both

chr	6	74949	75022	View	Met	CAT	0	0	75.69	63.20	12.49	Both
chr	59	3116578	3116505	View	Met	CAT	0	0	78.06	65.56	12.50	Both
chr	24	616923	616999	View	Met	CAT	0	0	90.17	64.11	26.06	Both
chr	30	925912	925988	View	Met	CAT	0	0	90.17	64.11	26.06	Both
chr	62	3116298	3116222	View	Met	CAT	0	0	90.17	64.11	26.06	Both
chr	60	3116499	3116423	View	Met	CAT	0	0	97.54	71.87	25.67	Both

chr	48	4187148	4187076	View	Phe	GAA	0	0	89.60	68.94	20.66	Both
chr	32	926090	926165	View	Phe	GAA	0	0	97.89	77.22	20.67	Both
chr	64	3116089	3116014	View	Phe	GAA	0	0	97.89	77.22	20.67	Both

chr	57	3116759	3116683	View	Pro	TGG	0	0	94.72	72.38	22.34	Both

chr	16	572335	572425	View	Ser	GCT	0	0	71.43	35.25	36.18	Both
chr	69	3115662	3115572	View	Ser	GCT	0	0	71.43	35.25	36.18	Both

chr	27	925517	925608	View	Ser	GGA	0	0	63.95	26.70	37.25	Both

chr	3	26549	26641	View	Ser	TGA	0	0	72.49	40.68	31.81	Both
chr	61	3116415	3116323	View	Ser	TGA	0	0	72.49	40.68	31.81	Both

chr	52	3117265	3117190	View	Thr	CGT	0	0	85.36	74.50	10.86	Both

chr	9	163318	163390	View	Thr	GGT	0	0	75.20	48.62	26.58	Both

chr	12	176803	176875	View	Thr	TGT	0	0	82.36	64.49	17.87	Both
chr	33	926169	926241	View	Thr	TGT	0	0	82.36	64.49	17.87	Both

chr	35	926341	926414	View	Trp	CCA	0	0	71.01	44.96	26.05	Both

chr	13	176884	176968	View	Tyr	GTA	0	0	80.73	55.11	25.62	Both
chr	34	926249	926333	View	Tyr	GTA	0	0	80.73	55.11	25.62	Both

chr	8	163242	163315	View	Undet	???	0	0	80.44	54.77	25.67	Eufind

chr	72	1299799	1299727	View	Val	GAC	0	0	71.64	42.78	28.86	Both

chr	11	176669	176744	View	Val	TAC	0	0	95.52	75.81	19.71	Both
chr	29	925815	925890	View	Val	TAC	0	0	95.52	75.81	19.71	Both
chr	51	3117356	3117281	View	Val	TAC	0	0	95.52	75.81	19.71	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.