tRNAscan-SE Analysis of the Bacillus halodurans Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	65	3457850	3457775	View	Ala	GGC	0	0	86.05	64.67	21.38	Both

chr	13	124135	124210	View	Ala	TGC	0	0	92.94	75.72	17.22	Both
chr	23	283049	283124	View	Ala	TGC	0	0	92.94	75.72	17.22	Both
chr	37	658293	658368	View	Ala	TGC	0	0	92.94	75.72	17.22	Both
chr	4	119466	119541	View	Ala	TGC	0	0	92.94	75.72	17.22	Both
chr	68	2949551	2949476	View	Ala	TGC	0	0	92.94	75.72	17.22	Both

chr	11	123973	124049	View	Arg	ACG	0	0	81.43	62.48	18.95	Both
chr	31	558683	558759	View	Arg	ACG	0	0	81.43	62.48	18.95	Both
chr	53	1025355	1025431	View	Arg	ACG	0	0	81.43	62.48	18.95	Both
chr	75	2948769	2948693	View	Arg	ACG	0	0	81.43	62.48	18.95	Both

chr	77	2876706	2876632	View	Arg	CCG	0	0	60.68	35.19	25.49	Both

chr	67	3188115	3188039	View	Arg	TCT	0	0	91.41	66.44	24.97	Both

chr	14	267531	267605	View	Asn	GTT	0	0	89.39	59.84	29.55	Both
chr	38	1023797	1023871	View	Asn	GTT	0	0	89.39	59.84	29.55	Both
chr	55	1491438	1491512	View	Asn	GTT	0	0	89.39	59.84	29.55	Both
chr	24	558019	558093	View	Asn	GTT	0	0	92.27	65.33	26.94	Both

chr	28	558388	558464	View	Asp	GTC	0	0	95.80	75.36	20.44	Both
chr	43	1024418	1024494	View	Asp	GTC	0	0	95.80	75.36	20.44	Both
chr	62	4163805	4163729	View	Asp	GTC	0	0	95.80	75.36	20.44	Both

chr	51	1025154	1025224	View	Cys	GCA	0	0	67.13	40.59	26.54	Both

chr	59	2952402	2952473	View	Gln	TTG	0	0	70.66	44.01	26.65	Both
chr	20	282749	282823	View	Gln	TTG	0	0	78.95	52.28	26.67	Both
chr	49	1024993	1025067	View	Gln	TTG	0	0	78.95	52.28	26.67	Both
chr	73	2948924	2948850	View	Gln	TTG	0	0	78.95	52.28	26.67	Both

chr	40	1023980	1024051	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	26	558197	558271	View	Glu	TTC	0	0	71.62	46.55	25.07	Both
chr	16	282063	282137	View	Glu	TTC	0	0	79.30	54.23	25.07	Both
chr	61	4163890	4163816	View	Glu	TTC	0	0	79.30	54.23	25.07	Both

chr	22	282970	283044	View	Gly	GCC	0	0	94.93	73.18	21.75	Both
chr	50	1025072	1025146	View	Gly	GCC	0	0	94.93	73.18	21.75	Both
chr	74	2948845	2948771	View	Gly	GCC	0	0	94.93	73.18	21.75	Both
chr	9	123771	123845	View	Gly	GCC	0	0	94.93	73.18	21.75	Both

chr	76	2948507	2948437	View	Gly	TCC	0	0	73.06	49.35	23.71	Both
chr	66	3188193	3188120	View	Gly	TCC	0	0	78.55	52.04	26.51	Both
chr	33	558863	558936	View	Gly	TCC	0	0	81.36	57.62	23.74	Both

chr	48	1024904	1024979	View	His	GTG	0	0	78.04	55.38	22.66	Both
chr	72	2949015	2948940	View	His	GTG	0	0	78.04	55.38	22.66	Both

chr	3	119378	119454	View	Ile	GAT	0	0	101.27	80.71	20.56	Both
chr	34	558976	559052	View	Ile	GAT	0	0	101.27	80.71	20.56	Both
chr	36	658205	658281	View	Ile	GAT	0	0	102.39	81.84	20.55	Both

chr	54	1039353	1039438	View	Leu	CAA	0	0	67.31	38.41	28.90	Both

chr	30	558590	558673	View	Leu	GAG	0	0	61.41	25.06	36.35	Both

chr	10	123869	123957	View	Leu	TAA	0	0	76.51	48.25	28.26	Both
chr	52	1025251	1025339	View	Leu	TAA	0	0	77.63	49.37	28.26	Both

chr	29	558492	558574	View	Leu	TAG	0	0	63.18	41.97	21.21	Both
chr	8	123679	123764	View	Leu	TAG	0	0	71.48	50.24	21.24	Both

chr	21	282887	282962	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	60	4163975	4163900	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	7	123595	123670	View	Lys	TTT	0	0	98.67	74.23	24.44	Both

chr	2	94883	94956	View	Met	CAT	0	0	78.06	65.56	12.50	Both
chr	56	1491519	1491592	View	Met	CAT	0	0	78.06	65.56	12.50	Both
chr	35	577380	577453	View	Met	CAT	0	0	79.42	53.91	25.51	Both
chr	42	1024337	1024413	View	Met	CAT	0	0	87.72	62.18	25.54	Both
chr	70	2949194	2949118	View	Met	CAT	0	0	87.72	62.18	25.54	Both
chr	57	1491644	1491720	View	Met	CAT	0	0	94.46	71.18	23.28	Both

chr	44	1024505	1024580	View	Phe	GAA	0	0	94.49	72.58	21.91	Both
chr	63	4163719	4163644	View	Phe	GAA	0	0	94.49	72.58	21.91	Both

chr	12	124055	124131	View	Pro	TGG	0	0	94.03	71.99	22.04	Both
chr	32	558780	558856	View	Pro	TGG	0	0	94.03	71.99	22.04	Both

chr	25	558096	558186	View	Ser	GCT	0	0	74.12	38.74	35.38	Both

chr	39	1023873	1023966	View	Ser	GGA	0	0	70.64	33.59	37.05	Both

chr	1	45480	45572	View	Ser	TGA	0	0	79.08	46.50	32.58	Both
chr	58	1491735	1491827	View	Ser	TGA	0	0	79.08	46.50	32.58	Both
chr	69	2949458	2949366	View	Ser	TGA	0	0	79.08	46.50	32.58	Both

chr	15	267613	267685	View	Thr	GGT	0	0	77.38	49.94	27.44	Both

chr	18	282562	282634	View	Thr	TGT	0	0	82.36	64.49	17.87	Both
chr	6	123515	123587	View	Thr	TGT	0	0	82.36	64.49	17.87	Both
chr	64	4163258	4163186	View	Thr	TGT	0	0	82.36	64.49	17.87	Both
chr	45	1024586	1024661	View	Thr	TGT	0	0	90.66	72.77	17.89	Both

chr	47	1024812	1024885	View	Trp	CCA	0	0	71.01	44.96	26.05	Both

chr	19	282656	282740	View	Tyr	GTA	0	0	80.73	55.11	25.62	Both
chr	46	1024716	1024800	View	Tyr	GTA	0	0	80.73	55.11	25.62	Both
chr	71	2949112	2949028	View	Tyr	GTA	0	0	80.73	55.11	25.62	Both

chr	78	2860288	2860216	View	Val	GAC	0	0	69.44	44.96	24.48	Both

chr	17	282231	282306	View	Val	TAC	0	0	94.22	73.01	21.21	Both
chr	41	1024086	1024161	View	Val	TAC	0	0	94.22	73.01	21.21	Both
chr	27	558305	558380	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	5	123398	123473	View	Val	TAC	0	0	97.15	78.84	18.31	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.