tRNAscan-SE Analysis of the Bacillus halodurans Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCATTAGCTCAGCTGGGAGAGCGCTTCGCTGGCAGCGAAGAG...........GtCAGCGGTTCGAGCCCGCTATGCTCCACCA chr.trna65-AlaGGC Sc: 86.05  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCACCA chr.trna68-AlaTGC Sc: 92.94  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCACCA chr.trna4-AlaTGC Sc: 92.94  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCACCA chr.trna37-AlaTGC Sc: 92.94  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCACCA chr.trna23-AlaTGC Sc: 92.94  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCACCA chr.trna13-AlaTGC Sc: 92.94  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGCCCGTAGCTCAATTGGAtA.GAGCGTTTGACTACGGATCAAAAG...........GtTAGGGGTTCGACTCCTCT.CGGGCGCGCCA chr.trna75-ArgACG Sc: 81.43  
GCGCCCGTAGCTCAATTGGAtA.GAGCGTTTGACTACGGATCAAAAG...........GtTAGGGGTTCGACTCCTCT.CGGGCGCGCCA chr.trna53-ArgACG Sc: 81.43  
GCGCCCGTAGCTCAATTGGAtA.GAGCGTTTGACTACGGATCAAAAG...........GtTAGGGGTTCGACTCCTCT.CGGGCGCGCCA chr.trna31-ArgACG Sc: 81.43  
GCGCCCGTAGCTCAATTGGAtA.GAGCGTTTGACTACGGATCAAAAG...........GtTAGGGGTTCGACTCCTCT.CGGGCGCGCCA chr.trna11-ArgACG Sc: 81.43  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGCCTATGGTGAAAG.GGAtA.TCACACGAGATTCCGGTTCTCGC............GtTGTGGGTTCGAATCCTGC.TAGGCGCGCCA chr.trna77-ArgCCG Sc: 60.68  



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GTCCCAGTAGCTCAGCTGGAtA.GAGCAACGGCCTTCTAAGCCGTCG...........GtCGGGAGTTCGAATCTCTC.CTGGGACGCCA chr.trna67-ArgTCT Sc: 91.41  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCGCAGTAGCTCAGTGGTA.GAGCAATCGGCTGTTAACCGATCG...........GtCGTAGGTTCGAGTCCTACCTGCGGAGCCA chr.trna24-AsnGTT Sc: 92.27  
TCCACAGTAGCTCAGTGGTA.GAGCAATCGGCTGTTAACCGATCG...........GtCGTAGGTTCGAGTCCTACCTGTGGAGCCA chr.trna55-AsnGTT Sc: 89.39  
TCCACAGTAGCTCAGTGGTA.GAGCAATCGGCTGTTAACCGATCG...........GtCGTAGGTTCGAGTCCTACCTGTGGAGCCA chr.trna38-AsnGTT Sc: 89.39  
TCCACAGTAGCTCAGTGGTA.GAGCAATCGGCTGTTAACCGATCG...........GtCGTAGGTTCGAGTCCTACCTGTGGAGCCA chr.trna14-AsnGTT Sc: 89.39  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGTCCCGTCCGGACCGCCA chr.trna62-AspGTC Sc: 95.80  
GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGTCCCGTCCGGACCGCCA chr.trna43-AspGTC Sc: 95.80  
GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGTCCCGTCCGGACCGCCA chr.trna28-AspGTC Sc: 95.80  



Cys tRNAs



>>>>>>>..>>>..........<<<..>>>>.......<<<<................>>>>>.......<<<<<.<<<<<<<....
GGCGGCATAGCCAAGTGGTA.AGGCACGGGTCTGCAAAACCCTT...........AtCCCCGGTTCGAATCCGGG.TGCCGCCT... chr.trna51-CysGCA Sc: 67.13  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGCTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTGA...........TgCGCTGGTTCGAATCCAGCTAGCCCAGCCA chr.trna73-GlnTTG Sc: 78.95  
TGGGCTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTGA...........TgCGCTGGTTCGAATCCAGCTAGCCCAGCCA chr.trna49-GlnTTG Sc: 78.95  
TGGGCTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTGA...........TgCGCTGGTTCGAATCCAGCTAGCCCAGCCA chr.trna20-GlnTTG Sc: 78.95  
TGGGCTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTGA...........TgCGCTGGTTCGAATCCAGCTAGCCCAG... chr.trna59-GlnTTG Sc: 70.66  



Glu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCACCA chr.trna61-GluTTC Sc: 79.30  
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCACCA chr.trna16-GluTTC Sc: 79.30  
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCATCA chr.trna26-GluTTC Sc: 71.62  
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCA... chr.trna40-GluTTC Sc: 71.01  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGGAAGTAGTTCAGTGGTA.GAACACCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAATCCCGT.CTTCCGCTCCA chr.trna9-GlyGCC Sc: 94.93  
GCGGAAGTAGTTCAGTGGTA.GAACACCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAATCCCGT.CTTCCGCTCCA chr.trna74-GlyGCC Sc: 94.93  
GCGGAAGTAGTTCAGTGGTA.GAACACCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAATCCCGT.CTTCCGCTCCA chr.trna50-GlyGCC Sc: 94.93  
GCGGAAGTAGTTCAGTGGTA.GAACACCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAATCCCGT.CTTCCGCTCCA chr.trna22-GlyGCC Sc: 94.93  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTAGTTTAGTGGTA.AAACCTCAGCCTTCCAAGCTGAT............GtCGTGGGTTCGATTCCCAT.CACCCGCTCCA chr.trna33-GlyTCC Sc: 81.36  
GCGGGTGTAGTTTAGTGGTA.AAACCTCAGCCTTCCAAGCTGAT............GtCGTGAGTTCGATTCTCAT.CACCCGCTCCA chr.trna66-GlyTCC Sc: 78.55  
GCGGGTGTAGTTTAGTGGTA.AAACCTCAGCCTTCCAAGCTGAT............GtCGTGGGTTCGATTCCCAT.CACCCGCT... chr.trna76-GlyTCC Sc: 73.06  



His tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGACTGTGGCGAAGTGGTtA.ACGCACCGGATTGTGGCTCCGGCA...........CtCGTGGGTTCGATTCCCATCAGTCGCCCCA chr.trna72-HisGTG Sc: 78.04  
GCGACTGTGGCGAAGTGGTtA.ACGCACCGGATTGTGGCTCCGGCA...........CtCGTGGGTTCGATTCCCATCAGTCGCCCCA chr.trna48-HisGTG Sc: 78.04  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCGAGTCCACTCAGGCCCACCA chr.trna36-IleGAT Sc: 102.39  
GGGCCTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCAAGTCCACTCAGGCCCACCA chr.trna34-IleGAT Sc: 101.27  
GGGCCTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCAAGTCCACTCAGGCCCACCA chr.trna3-IleGAT Sc: 101.27  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.........<<<<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGTTGTGGCGGAAT.GGCaG.ACGCGCTAGGTTGAGGGCCTAGTGGGGGTT.........GACCCCGTGGAGGTTCGAGTCCTCT.CAACCGCA... chr.trna30-LeuGAG Sc: 61.41  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>...............<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTGGCGGAATTGGCaG.ACGCGCTAGACTTAGGATCTAGT.GTC...CTTGt.......GACGTGGGGGTTCGACTCCCTT.CACCCGCACCA chr.trna8-LeuTAG Sc: 71.48  
GCGGGTGTGGCGGAATTGGCaG.ACGCGCTAGACTTAGGATCTAGT.GTC...CTTGt.......GACGTGGGGGTTCGACTCCCTT.CACCCGCA... chr.trna29-LeuTAG Sc: 63.18  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>.>...........<.<<...>>>>>.......<<<<<.<<<<<<<....
GCCGGTGTGGCGGAATTGGCaG.ACGCGCACGACTCAAAATCGTGTTCCCTC...........GTGGAGTGTCGGTTCGACCCCGAC.CACCGGTACCA chr.trna54-LeuCAA Sc: 67.31  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>...........<<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTGGTGGAATTGGCaG.ACACACAGGACTTAAAATCCTGC.GGTAG.GTGA......CTACCGTGCCGGTTCGAGTCCGGC.CCTCGGCACCA chr.trna52-LeuTAA Sc: 77.63  
GCCGGGGTGGTGGAATTGGCaG.ACACACAGGACTTAAAATCCTGC.GGTAG.GTGA......CTACCGTGCCGGTTCAAGTCCGGC.CCTCGGCACCA chr.trna10-LeuTAA Sc: 76.51  



Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCGAAGGTTCGAGTCCTTCATGGCTCACCA chr.trna7-LysTTT Sc: 98.67  
GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCGAAGGTTCGAGTCCTTCATGGCTCACCA chr.trna60-LysTTT Sc: 98.67  
GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCGAAGGTTCGAGTCCTTCATGGCTCACCA chr.trna21-LysTTT Sc: 98.67  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCCTTAGCTCAGTT.GGTcAGAGCAGTCGGCTCATAACCGATCG...........GtCGTAGGTTCGAGTCCTACAGGGTCCACCA chr.trna57-MetCAT Sc: 94.46  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGGCGGTTCAAATCCGTCCCCCGCAACCA chr.trna70-MetCAT Sc: 87.72  
CGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGGCGGTTCAAATCCGTCCCCCGCAACCA chr.trna42-MetCAT Sc: 87.72  
CGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGGCGGTTCAAATCCGTCCCCCGCAA... chr.trna35-MetCAT Sc: 79.42  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGTGTAGCTCAGCT.GGCtAGAGCGTACGGTTCATACCCGTGAG...........GtCGGGGGTTCGATTCCCTCCGCCGCTA... chr.trna56-MetCAT Sc: 78.06  
GGCGGTGTAGCTCAGCT.GGCtAGAGCGTACGGTTCATACCCGTGAG...........GtCGGGGGTTCGATTCCCTCCGCCGCTA... chr.trna2-MetCAT Sc: 78.06  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTCGGTAGCTCAGTCGGTAGAGCAATGGACTGAAAATCCATGT...........GtCGGCGGTTCGATTCCGTCCCGAGCCACCA chr.trna63-PheGAA Sc: 94.49  
GGCTCGGTAGCTCAGTCGGTAGAGCAATGGACTGAAAATCCATGT...........GtCGGCGGTTCGATTCCGTCCCGAGCCACCA chr.trna44-PheGAA Sc: 94.49  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGG...........GtCGCAGGTTCAAATCCTGTCTTCCCGACCA chr.trna32-ProTGG Sc: 94.03  
CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGG...........GtCGCAGGTTCAAATCCTGTCTTCCCGACCA chr.trna12-ProTGG Sc: 94.03  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>>>>>>>.....<<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGCTGTCCGAGTT.GGCcgA.AGGAGCACGATTGGAAATCGTGT.AGGCGGTGACAaACCGTCTCGAGGGTTCGAATCCCTC..GCTCTCCGCCA chr.trna39-SerGGA Sc: 70.64  


>>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>.........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGGAGTACCCAAGTCtGGCtgA.AGGGATCGGTCTTGAAAACCGACAGGCGGG.TTAA..ACCGCGCGGGGGTTCGAATCCCTC..CTCCTCCGCCA chr.trna69-SerTGA Sc: 79.08  
GGAGGAGTACCCAAGTCtGGCtgA.AGGGATCGGTCTTGAAAACCGACAGGCGGG.TTAA..ACCGCGCGGGGGTTCGAATCCCTC..CTCCTCCGCCA chr.trna58-SerTGA Sc: 79.08  
GGAGGAGTACCCAAGTCtGGCtgA.AGGGATCGGTCTTGAAAACCGACAGGCGGG.TTAA..ACCGCGCGGGGGTTCGAATCCCTC..CTCCTCCGCCA chr.trna1-SerTGA Sc: 79.08  


>>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>.......<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAAGTACCCAAGT..GGCtgA.AGGGGCTCCCCTGCTAAGGGAGTAGGTCGT.GTGA..GCGGCGCGAGGGTTCAAATCCCTC..CTTCTCCGCCA chr.trna25-SerGCT Sc: 74.12  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTTCCATAGCTCAGTCGGTAGAGCACTACCATGGTAAGGTAGGG...........GtCAGCGGTTCAAGTCCGCTTGGAAGCT... chr.trna15-ThrGGT Sc: 77.38  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGTCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtTGGGGGTTCAAGTCCTCTGGCCGGCACCA chr.trna45-ThrTGT Sc: 90.66  
GCCGGTCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtTGGGGGTTCAAGTCCTCTGGCCGGCA... chr.trna64-ThrTGT Sc: 82.36  
GCCGGTCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtTGGGGGTTCAAGTCCTCTGGCCGGCA... chr.trna6-ThrTGT Sc: 82.36  
GCCGGTCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtTGGGGGTTCAAGTCCTCTGGCCGGCA... chr.trna18-ThrTGT Sc: 82.36  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGGGGCATAGTTTAACGGTA.GAACAGAGGTCTCCAAAACCTCCG...........GTGTGGGTTCGATTCCTACTGCCCCTGCCA chr.trna47-TrpCCA Sc: 71.01  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGGTAGCGAAGTGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCCTCA.....GGGTtCGGCGGTTCGAATCCGTC.CCCCTCCACCA chr.trna71-TyrGTA Sc: 80.73  
GGAGGGGTAGCGAAGTGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCCTCA.....GGGTtCGGCGGTTCGAATCCGTC.CCCCTCCACCA chr.trna46-TyrGTA Sc: 80.73  
GGAGGGGTAGCGAAGTGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCCTCA.....GGGTtCGGCGGTTCGAATCCGTC.CCCCTCCACCA chr.trna19-TyrGTA Sc: 80.73  



Val tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GATCCGTTAGCTCAGTTGGGAGAGCGCTACCTTGACAGGGTAGAG...........GtCACTGGTTCGAGCCCAGTACGGGTCA... chr.trna78-ValGAC Sc: 69.44  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGGGTTAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGG...........GtCGGCGGTTCGATCCCGTCACCCTCCACCA chr.trna5-ValTAC Sc: 97.15  
GGAGGATTAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGG...........GtCGGCGGTTCGATCCCGTCATCCTCCACCA chr.trna27-ValTAC Sc: 97.03  
GGAGGATTAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGG...........GtCGGCAGTTCGATCCTGTCATCCTCCACCA chr.trna41-ValTAC Sc: 94.22  
GGAGGATTAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGG...........GtCGGCAGTTCGATCCTGTCATCCTCCACCA chr.trna17-ValTAC Sc: 94.22

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.