tRNAscan-SE Analysis of the Bacillus clausii KSM-K16 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 75
 Selenocysteine tRNAs (TCA) 0
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 0
 Predicted pseudogenes 0
 Total tRNAs 75
 
 
Intron Summary tRNAs with introns 
 0

Four Box tRNA Sets Isotype Anticodon Count Total
 Ala AGC 
   GGC 
 1 CGC 
   TGC 
 4 5
 Gly ACC 
   GCC 
 3 CCC 
   TCC 
 3 6
 Pro AGG 
   GGG 
   CGG 
   TGG 
 2 2
 Thr AGT 
   GGT 
 1 CGT 
 1 TGT 
 2 4
 Val AAC 
   GAC 
 1 CAC 
   TAC 
 4 5  Six Box tRNA Sets Isotype Anticodon Count Total
 Ser AGA 
   GGA 
 1 CGA 
   TGA 
 3 ACT 
   GCT 
 2   
     
   6
 Arg ACG 
 3 GCG 
   CCG 
 1 TCG 
     
     
   CCT 
 1 TCT 
 1 6
 Leu AAG 
   GAG 
 1 CAG 
 1 TAG 
 2   
     
   CAA 
 1 TAA 
 2 7
 Two Box tRNA Sets Isotype Anticodon Count Total
 Phe AAA 
   GAA 
 2   
     
   2
 Asn ATT 
   GTT 
 4   
     
   4
 Lys   
     
   CTT 
   TTT 
 3 3
 Asp ATC 
   GTC 
 3   
     
   3
 Glu   
     
   CTC 
   TTC 
 4 4
 His ATG 
   GTG 
 2   
     
   2
 Gln   
     
   CTG 
   TTG 
 3 3  Two Box & Other tRNA Sets Isotype Anticodon Count Total
 Ile AAT 
   GAT 
 3   
   TAT 
   3
 Met   
     
   CAT 
 6   
   6
 Tyr ATA 
   GTA 
 2   
     
   2
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 1   
     
   1
 Trp   
     
   CCA 
 1   
   1
 SelCys   
     
     
   TCA 
   0

tRNAs Decoding Standard 20 AA	75
Selenocysteine tRNAs (TCA)	0
Possible suppressor tRNAs (CTA,TTA)	0
tRNAs with undetermined or unknown isotypes	0
Predicted pseudogenes	0
Total tRNAs	75

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.