tRNAscan-SE Analysis of the Bacillus clausii KSM-K16 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna62 (3031223-3031151)	Length: 73 bp
Type: Ala	Anticodon: GGC at 34-36 (3031190-3031188)	Score: 77.06
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCAACGCTGGCAGCGTTGAGGtCAGGGGTTCGAGCCCCCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna65 (2627924-2627852)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (2627891-2627889)	Score: 84.64
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna19 (263849-263924)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (263882-263884)	Score: 85.26
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (142688-142763)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (142721-142723)	Score: 92.94
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna32 (935596-935671)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (935629-935631)	Score: 92.94
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna49 (1448083-1448156)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (1448117-1448119)	Score: 76.75
Seq: GCGCCCGTAGCTCAACTGGAtAGAGTACTTGACTACGAATCAAGCGGtTAGAGGTTCGAATCCTCTCGGGCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna27 (932932-933008)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (932966-932968)	Score: 85.05
Seq: GCGCCCGTAGCTCAACTGGAtAGAGTACTTGACTACGAATCAAGCGGtTAGAGGTTCGAATCCTCTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna9 (142523-142599)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (142557-142559)	Score: 85.05
Seq: GCGCCCGTAGCTCAACTGGAtAGAGTACTTGACTACGAATCAAGCGGtTAGAGGTTCGAATCCTCTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna74 (2573894-2573822)	Length: 73 bp
Type: Arg	Anticodon: CCG at 35-37 (2573860-2573858)	Score: 54.56
Seq: GCGCCTATGGTGAAATGGGatATCACACGAGATTCCGGTTCTCGCGtTGTGGGTTCGAATCCTGCTAGGCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna56 (3447112-3447185)	Length: 74 bp
Type: Arg	Anticodon: CCT at 35-37 (3447146-3447148)	Score: 81.92
Seq: GCGCCTATAGCTCAATCGGAtAGAGCATCAGCCTCCTAAGCTGAGGGtTGCAGGTTCAATTCCTGCTAGGCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna64 (2781278-2781202)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (2781244-2781242)	Score: 87.90
Seq: GTCCCAGTAGCTCAGCAGGAtAGAGCAACGGCCTTCTAAGCCGTCGGtCGGGAGTTCGAATCTCTCCTGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna12 (223516-223590)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (223548-223550)	Score: 87.08
Seq: TCCACAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGtCGCAGGTTCGAATCCTGCCTGTGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna20 (890651-890725)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (890683-890685)	Score: 87.08
Seq: TCCACAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGtCGCAGGTTCGAATCCTGCCTGTGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna34 (1446204-1446278)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (1446236-1446238)	Score: 87.08
Seq: TCCACAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGtCGCAGGTTCGAATCCTGCCTGTGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna51 (1841973-1842047)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (1842005-1842007)	Score: 87.08
Seq: TCCACAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGtCGCAGGTTCGAATCCTGCCTGTGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna24 (891359-891435)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (891393-891395)	Score: 95.80
Seq: GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAGGtCGCGGGTTCGAGTCCCGTCCGGACCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna39 (1447105-1447181)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (1447139-1447141)	Score: 95.80
Seq: GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAGGtCGCGGGTTCGAGTCCCGTCCGGACCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna59 (4281745-4281669)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (4281711-4281709)	Score: 95.80
Seq: GGTCCGGTAGTTCAGTTGGTtAGAATGCCTGCCTGTCACGCAGGAGGtCGCGGGTTCGAGTCCCGTCCGGACCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna47 (1447868-1447941)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (1447900-1447902)	Score: 75.79
Seq: GGCGGCATAGCCAAGTGGTAAGGCACGGGTCTGCAAAACCCTTAtCACCGGTTCAAATCCGGTTGCCGCCTCCA
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna45 (1447708-1447781)	Length: 74 bp
Type: Gln	Anticodon: TTG at 33-35 (1447740-1447742)	Score: 73.25
Seq: TGGGCTATAGCCAAGCGGTAAGGCATCGGATTTTGATTCCGTGAtCCCTGGTTCGAATCCAGGTAGCCCAGCCA
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna17 (263650-263724)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (263682-263684)	Score: 75.00
Seq: TGGGCTATAGCCAAGCGGTAAGGCAACGGATTTTGATTCCGTGACgCGCTGGTTCGAATCCAGCTAGCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna68 (2627388-2627314)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (2627356-2627354)	Score: 79.48
Seq: TGGGCTATAGCCAAGCGGTAAGGCAACGGATTTTGATTCCGTGATtCCCTGGTTCGAATCCAGGTAGCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (263085-263156)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (263118-263120)	Score: 70.15
Seq: GGCCCGTTGGTCAAGCGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna58 (4281840-4281769)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (4281807-4281805)	Score: 70.15
Seq: GGCCCGTTGGTCAAGCGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna22 (890822-890893)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (890855-890857)	Score: 71.01
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna36 (1446388-1446462)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (1446421-1446423)	Score: 78.45
Seq: GGCCCGTTGGTCAAGCGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna46 (1447785-1447856)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (1447817-1447819)	Score: 77.62
Seq: GCGGAAGTAGTTCAGTGGTAGAATATCACCTTGCCAAGGTGGGGGtCGCGGGTTCGAATCCCGTCTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna7 (142327-142398)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (142359-142361)	Score: 77.62
Seq: GCGGAAGTAGTTCAGTGGTAGAATATCACCTTGCCAAGGTGGGGGtCGCGGGTTCGAATCCCGTCTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna69 (2627310-2627239)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (2627278-2627276)	Score: 81.95
Seq: GCGGAAGTAGTTCAGTGGTAGAACATCACCTTGCCAAGGTGGGGGtCGCGGGTTCGAATCCCGTCTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna70 (2627056-2626986)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (2627024-2627022)	Score: 65.38
Seq: GCGGGTGTAGTTTAGTGGTAAAACCTCAGCCTTCCAAGCTGATGATGTGAGTTCGATTCTCATCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna29 (933276-933349)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (933308-933310)	Score: 76.49
Seq: GCGGGTGTAGTTTAGTGGTAAAACCTCAGCCTTCCAAGCTGATGATGTGGGTTCGATTCCCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna63 (2781357-2781284)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (2781325-2781323)	Score: 76.83
Seq: GCGGGTGTAGTTTAGTGGTAAAACCTCAGCCTTCCAAGCTGATGATGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna44 (1447619-1447695)	Length: 77 bp
Type: His	Anticodon: GTG at 34-36 (1447652-1447654)	Score: 72.61
Seq: GCGGTTGTGGCGAAGTGGTtAACGCACCGGATTGTGGTTCCGGCATttCGTGGGTTCGATTCCCATCAGCCGCCCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna53 (1842157-1842232)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (1842190-1842192)	Score: 78.28
Seq: GCGGTTGTGGCGAAGTGGTtAACGCACCGGATTGTGGTTCCGGCATtCGTGGGTTCGATTCCCATCAGCCGCCCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna31 (935504-935580)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (935538-935540)	Score: 101.27
Seq: GGGCCTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCAAGTCCACTCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (933381-933457)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (933415-933417)	Score: 102.39
Seq: GGGCCTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCGAGTCCACTCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna71 (2626970-2626894)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (2626936-2626934)	Score: 93.59
Seq: GGGCCTGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCAAGTCCACTCAGGCCCATCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna50 (1450811-1450892)	Length: 82 bp
Type: Leu	Anticodon: CAA at 35-37 (1450845-1450847)	Score: 60.19
Seq: GCCGGTGTGGCGGAATTGGCaGACGCGCACGACTCAAAATCGTGTTCCTTCGGGAGTGTCGGTTCGACCCCGACCACCGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna73 (2626745-2626662)	Length: 84 bp
Type: Leu	Anticodon: CAG at 35-37 (2626711-2626709)	Score: 65.49
Seq: GCGGGTGTGGCGGAATTGGCaGACGCGCTAGAATCAGGCTCTAGTGTCCTAACGGACGTGGGGGTTCAAGTCCCTTCACCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna26 (891553-891637)	Length: 85 bp
Type: Leu	Anticodon: GAG at 34-36 (891586-891588)	Score: 57.09
Seq: GCGGTTGTGGCGGAATGGCaGACGCGCTAGGTTGAGGGCCTAGTGGGAGTTAAATCCCGTGGAGGTTCGAGTCCTCTCAACCGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna8 (142418-142503)	Length: 86 bp
Type: Leu	Anticodon: TAA at 35-37 (142452-142454)	Score: 67.42
Seq: GCCGGGATGGTGGAATTGGCaGACACACAGGACTTAAAATCCTGCGGTAGGTGACTACCGTGCCGGTTCAAGTCCGGCTCTCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna48 (1447971-1448056)	Length: 86 bp
Type: Leu	Anticodon: TAA at 35-37 (1448005-1448007)	Score: 69.33
Seq: GCCGGGGTGGTGGAATTGGCaGACACACAGGACTTAAAATCCTGCGGTAGGTGACTACCGTGCCGGTTCGAGTCCGGCCCTCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna6 (142225-142307)	Length: 83 bp
Type: Leu	Anticodon: TAG at 35-37 (142259-142261)	Score: 69.29
Seq: GCGGGTGTGGCGGAATTGGCaGACGCGCTAGACTTAGGATCTAGTGTCTTTAtGACGTGGGGGTTCAAGTCCCTTCACCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna25 (891461-891546)	Length: 86 bp
Type: Leu	Anticodon: TAG at 35-37 (891495-891497)	Score: 77.59
Seq: GCGGGTGTGGCGGAATTGGCaGACGCGCTAGACTTAGGATCTAGTGTCTTTAtGACGTGGGGGTTCAAGTCCCTTCACCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna18 (263728-263800)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (263761-263763)	Score: 90.38
Seq: GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCGAAGGTTCGAGTCCTTCATGGCTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna5 (142137-142212)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (142170-142172)	Score: 98.67
Seq: GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCGAAGGTTCGAGTCCTTCATGGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna57 (4281926-4281851)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (4281893-4281891)	Score: 98.67
Seq: GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCGAAGGTTCGAGTCCTTCATGGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna2 (115582-115655)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (115616-115618)	Score: 75.69
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTACGGTTCATACCCGTGAGGtCGGGGGTTCGATCCCCTCCGCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna33 (943808-943881)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (943842-943844)	Score: 79.42
Seq: CGCGGGGTGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGGCGGTTCAAATCCGTCCCCCGCAA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..

chr.trna52 (1842050-1842126)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1842084-1842086)	Score: 83.99
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTACGGTTCATACCCGTGAGGtCGGGGGTTCGATCCCCTCCGCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna38 (1447011-1447087)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1447045-1447047)	Score: 86.86
Seq: CGCGGGGTGGAGCAGCCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGGCGGTTCAAATCCGTCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna67 (2627470-2627394)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (2627436-2627434)	Score: 87.72
Seq: CGCGGGGTGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGGCGGTTCAAATCCGTCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna54 (1842250-1842323)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (1842284-1842286)	Score: 88.94
Seq: GGACCCTTAGCTCAGTTGGTtAGAGCAGTCGGCTCATAACCGATTGGtCGTAGGTTCGAGTCCTACAGGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna40 (1447194-1447269)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (1447227-1447229)	Score: 97.10
Seq: GGCTCGATAGCTCAGTTGGTAGAGCAACGGACTGAAAATCCGTGTGtCGGCGGTTCGATTCCGTCTCGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna60 (4281632-4281557)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (4281599-4281597)	Score: 97.89
Seq: GGCTCGGTAGCTCAGTTGGTAGAGCAACGGACTGAAAATCCGTGTGtCGGCGGTTCGATTCCGTCCCGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna10 (142604-142680)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (142638-142640)	Score: 92.14
Seq: CGGGAAGTAGCTCAGCTtGGCAGAGCACTTGGTTTGGGACCAAGGGGtCGCAGGTTCAAATCCTGTCTTCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna28 (933012-933088)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (933046-933048)	Score: 92.14
Seq: CGGGAAGTAGCTCAGCTtGGCAGAGCACTTGGTTTGGGACCAAGGGGtCGCAGGTTCAAATCCTGTCTTCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (890727-890814)	Length: 88 bp
Type: Ser	Anticodon: GCT at 35-37 (890761-890763)	Score: 69.32
Seq: GGAGAAGTACCCAAGTGGCtgAAGGGGCTCCCCTGCTAAGGGAGTAGGTCGTGTAAGCGGCGCGAGGGTTCAAATCCCTCCTTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna72 (2626862-2626772)	Length: 91 bp
Type: Ser	Anticodon: GCT at 35-37 (2626828-2626826)	Score: 76.62
Seq: GGAGAAGTACCCAAGTGGCtgAAGGGGCTCCCCTGCTAAGGGAGTAGGTCGCGTAAGCGGCGCGAGGGTTCAAATCCCTCCTTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna35 (1446282-1446375)	Length: 94 bp
Type: Ser	Anticodon: GGA at 36-38 (1446317-1446319)	Score: 73.66
Seq: GGAGAGCTGTCCGAGTTGGCcgAAGGAGCACGATTGGAAATCGTGTAGGCGGTGTAAaACCGTCTCGAGGGTTCGAATCCCTCGCTCTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna55 (1842328-1842417)	Length: 90 bp
Type: Ser	Anticodon: TGA at 37-39 (1842364-1842366)	Score: 67.19
Seq: GGAGGAATACCCAAGTCtGGCtgAAGGGATCGGTCTTGAAAACCGACAGGCGGGTCACACCGCGCGGGGGTTCGAATCCCTCTTCCTCCG
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>......<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna1 (46190-46282)	Length: 93 bp
Type: Ser	Anticodon: TGA at 37-39 (46226-46228)	Score: 75.49
Seq: GGAGGAATACCCAAGTCtGGCtgAAGGGATCGGTCTTGAAAACCGACAGGCGGGTCACACCGCGCGGGGGTTCGAATCCCTCTTCCTCCGCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna66 (2627844-2627752)	Length: 93 bp
Type: Ser	Anticodon: TGA at 37-39 (2627808-2627806)	Score: 76.71
Seq: GGAGGAATACCCAAGTCtGGCtgAAGGGATCGGTCTTGAAAACCGACAGGCGGGTTACACCGCGCGGGGGTTCGAATCCCTCTTCCTCCGCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna41 (1447283-1447358)	Length: 76 bp
Type: Thr	Anticodon: CGT at 34-36 (1447316-1447318)	Score: 77.32
Seq: GCCGGTCTAGCTCAATTGGTAGAGCAACTGAATCGTAATCAGTAGGtTGGGGGTTCAAGTCCTCTGGCCGGCATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna13 (223598-223670)	Length: 73 bp
Type: Thr	Anticodon: GGT at 34-36 (223631-223633)	Score: 78.69
Seq: GCTTCCATAGCTCAGTCGGTAGAGCACCACCATGGTAAGGTGGGGGtCAGCGGTTCAAGTCCGCTTGGAAGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna61 (4281553-4281481)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (4281520-4281518)	Score: 82.36
Seq: GCCGGTCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTGGGGGTTCAAGTCCTCTGGCCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna4 (142043-142118)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (142076-142078)	Score: 90.66
Seq: GCCGGTCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTGGGGGTTCAAGTCCTCTGGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna43 (1447515-1447588)	Length: 74 bp
Type: Trp	Anticodon: CCA at 33-35 (1447547-1447549)	Score: 68.92
Seq: AGGGGCATAGTTTAACGGTAGAACAGAGGTCTCCAAAACCTCCAGTGTGGGTTCGATTCCTACTGCCCCTGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna16 (263553-263637)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (263587-263589)	Score: 78.82
Seq: GGAGGGGTAGCGAAGTGGCtaAACGCGGCGGACTGTAAATCCGCTCCCTCCGGGTtCGGCGGTTCGAATCCGTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna42 (1447423-1447507)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (1447457-1447459)	Score: 80.73
Seq: GGAGGGGTAGCGAAGTGGCtaAACGCGGCGGACTGTAAATCCGCTCCCTCAGGGTtCGGCGGTTCGAATCCGTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna75 (2571220-2571148)	Length: 73 bp
Type: Val	Anticodon: GAC at 34-36 (2571187-2571185)	Score: 69.44
Seq: GATCCGTTAGCTCAGTTGGGAGAGCGCTACCTTGACAGGGTAGAGGtCACTGGTTCGAGCCCAGTACGGGTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (263454-263529)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (263487-263489)	Score: 95.52
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGATCCCGTCATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna3 (141833-141908)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (141866-141868)	Score: 95.52
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGATCCCGTCATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna23 (891276-891351)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (891309-891311)	Score: 96.46
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGAGCCCGTCATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna37 (1446499-1446574)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (1446532-1446534)	Score: 96.46
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGAGCCCGTCATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.