tRNAscan-SE Analysis of the Bacillus clausii KSM-K16 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

tRNAs Sorted by Genome Locus

plain text version

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	46190	46282	View	Ser	TGA	0	0	75.49	40.68	34.81	Both
chr	2	115582	115655	View	Met	CAT	0	0	75.69	63.20	12.49	Both
chr	3	141833	141908	View	Val	TAC	0	0	95.52	75.81	19.71	Both
chr	4	142043	142118	View	Thr	TGT	0	0	90.66	72.77	17.89	Both
chr	5	142137	142212	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	6	142225	142307	View	Leu	TAG	0	0	69.29	46.11	23.18	Both
chr	7	142327	142398	View	Gly	GCC	0	0	77.62	59.34	18.28	Both
chr	8	142418	142503	View	Leu	TAA	0	0	67.42	38.47	28.95	Both
chr	9	142523	142599	View	Arg	ACG	0	0	85.05	64.56	20.49	Both
chr	10	142604	142680	View	Pro	TGG	0	0	92.14	70.10	22.04	Both
chr	11	142688	142763	View	Ala	TGC	0	0	92.94	75.72	17.22	Both
chr	12	223516	223590	View	Asn	GTT	0	0	87.08	58.79	28.29	Both
chr	13	223598	223670	View	Thr	GGT	0	0	78.69	52.48	26.21	Both
chr	14	263085	263156	View	Glu	TTC	0	0	70.15	45.10	25.05	Both
chr	15	263454	263529	View	Val	TAC	0	0	95.52	75.81	19.71	Both
chr	16	263553	263637	View	Tyr	GTA	0	0	78.82	55.63	23.19	Both
chr	17	263650	263724	View	Gln	TTG	0	0	75.00	48.33	26.67	Both
chr	18	263728	263800	View	Lys	TTT	0	0	90.38	65.95	24.43	Both
chr	19	263849	263924	View	Ala	TGC	0	0	85.26	68.04	17.22	Both
chr	20	890651	890725	View	Asn	GTT	0	0	87.08	58.79	28.29	Both
chr	21	890727	890814	View	Ser	GCT	0	0	69.32	33.97	35.35	Both
chr	22	890822	890893	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	23	891276	891351	View	Val	TAC	0	0	96.46	76.75	19.71	Both
chr	24	891359	891435	View	Asp	GTC	0	0	95.80	75.36	20.44	Both
chr	25	891461	891546	View	Leu	TAG	0	0	77.59	54.38	23.21	Both
chr	26	891553	891637	View	Leu	GAG	0	0	57.09	25.61	31.48	Both
chr	27	932932	933008	View	Arg	ACG	0	0	85.05	64.56	20.49	Both
chr	28	933012	933088	View	Pro	TGG	0	0	92.14	70.10	22.04	Both
chr	29	933276	933349	View	Gly	TCC	0	0	76.49	55.55	20.94	Both
chr	30	933381	933457	View	Ile	GAT	0	0	102.39	81.84	20.55	Both
chr	31	935504	935580	View	Ile	GAT	0	0	101.27	80.71	20.56	Both
chr	32	935596	935671	View	Ala	TGC	0	0	92.94	75.72	17.22	Both
chr	33	943808	943881	View	Met	CAT	0	0	79.42	53.91	25.51	Both
chr	34	1446204	1446278	View	Asn	GTT	0	0	87.08	58.79	28.29	Both
chr	35	1446282	1446375	View	Ser	GGA	0	0	73.66	36.61	37.05	Both
chr	36	1446388	1446462	View	Glu	TTC	0	0	78.45	53.38	25.07	Both
chr	37	1446499	1446574	View	Val	TAC	0	0	96.46	76.75	19.71	Both
chr	38	1447011	1447087	View	Met	CAT	0	0	86.86	61.33	25.53	Both
chr	39	1447105	1447181	View	Asp	GTC	0	0	95.80	75.36	20.44	Both
chr	40	1447194	1447269	View	Phe	GAA	0	0	97.10	75.71	21.39	Both
chr	41	1447283	1447358	View	Thr	CGT	0	0	77.32	59.42	17.90	Both
chr	42	1447423	1447507	View	Tyr	GTA	0	0	80.73	55.11	25.62	Both
chr	43	1447515	1447588	View	Trp	CCA	0	0	68.92	42.87	26.05	Both
chr	44	1447619	1447695	View	His	GTG	0	0	72.61	53.92	18.69	Both
chr	45	1447708	1447781	View	Gln	TTG	0	0	73.25	46.40	26.85	Both
chr	46	1447785	1447856	View	Gly	GCC	0	0	77.62	59.34	18.28	Both
chr	47	1447868	1447941	View	Cys	GCA	0	0	75.79	51.92	23.87	Both
chr	48	1447971	1448056	View	Leu	TAA	0	0	69.33	41.10	28.23	Both
chr	49	1448083	1448156	View	Arg	ACG	0	0	76.75	56.29	20.46	Both
chr	50	1450811	1450892	View	Leu	CAA	0	0	60.19	30.75	29.44	Both
chr	51	1841973	1842047	View	Asn	GTT	0	0	87.08	58.79	28.29	Both
chr	52	1842050	1842126	View	Met	CAT	0	0	83.99	71.47	12.52	Both
chr	53	1842157	1842232	View	His	GTG	0	0	78.28	59.59	18.69	Both
chr	54	1842250	1842323	View	Met	CAT	0	0	88.94	65.68	23.26	Both
chr	55	1842328	1842417	View	Ser	TGA	0	0	67.19	32.40	34.79	Both
chr	56	3447112	3447185	View	Arg	CCT	0	0	81.92	60.90	21.02	Both
chr	57	4281926	4281851	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	58	4281840	4281769	View	Glu	TTC	0	0	70.15	45.10	25.05	Both
chr	59	4281745	4281669	View	Asp	GTC	0	0	95.80	75.36	20.44	Both
chr	60	4281632	4281557	View	Phe	GAA	0	0	97.89	77.22	20.67	Both
chr	61	4281553	4281481	View	Thr	TGT	0	0	82.36	64.49	17.87	Both
chr	62	3031223	3031151	View	Ala	GGC	0	0	77.06	55.58	21.48	Both
chr	63	2781357	2781284	View	Gly	TCC	0	0	76.83	56.44	20.39	Both
chr	64	2781278	2781202	View	Arg	TCT	0	0	87.90	62.92	24.98	Both
chr	65	2627924	2627852	View	Ala	TGC	0	0	84.64	67.45	17.19	Both
chr	66	2627844	2627752	View	Ser	TGA	0	0	76.71	43.07	33.64	Both
chr	67	2627470	2627394	View	Met	CAT	0	0	87.72	62.18	25.54	Both
chr	68	2627388	2627314	View	Gln	TTG	0	0	79.48	49.71	29.77	Both
chr	69	2627310	2627239	View	Gly	GCC	0	0	81.95	63.54	18.41	Both
chr	70	2627056	2626986	View	Gly	TCC	0	0	65.38	41.69	23.69	Both
chr	71	2626970	2626894	View	Ile	GAT	0	0	93.59	73.04	20.55	Both
chr	72	2626862	2626772	View	Ser	GCT	0	0	76.62	40.92	35.70	Both
chr	73	2626745	2626662	View	Leu	CAG	0	0	65.49	40.13	25.36	Both
chr	74	2573894	2573822	View	Arg	CCG	0	0	54.56	29.09	25.47	Both
chr	75	2571220	2571148	View	Val	GAC	0	0	69.44	44.96	24.48	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.