tRNAscan-SE Analysis of the Bacillus cereus ATCC 10987 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	16	151066	151138	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	57	823794	823866	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	81	4650152	4650080	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	2	11076	11151	View	Ala	TGC	0	0	93.92	76.70	17.22	Both
chr	5	30850	30925	View	Ala	TGC	0	0	93.92	76.70	17.22	Both

chr	55	823621	823694	View	Arg	ACG	0	0	69.97	55.63	14.34	Both
chr	79	4650325	4650252	View	Arg	ACG	0	0	69.97	55.63	14.34	Both
chr	25	279293	279369	View	Arg	ACG	0	0	78.27	63.91	14.36	Both

chr	72	4843854	4843776	View	Arg	CCG	0	0	62.69	41.89	20.80	Both

chr	32	609775	609849	View	Asn	GTT	0	0	86.53	59.59	26.94	Both
chr	17	278404	278478	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	66	824646	824720	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	8	150325	150399	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	92	4649168	4649094	View	Asn	GTT	0	0	88.32	61.39	26.93	Both

chr	21	278782	278857	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	29	284475	284550	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	31	285007	285082	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	37	610220	610295	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	61	824231	824306	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	70	5203863	5203788	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	86	4649686	4649611	View	Asp	GTC	0	0	76.06	54.53	21.53	Both

chr	45	610977	611047	View	Cys	GCA	0	0	71.27	44.01	27.26	Both

chr	13	150823	150897	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	22	278945	279019	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	43	610808	610882	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	50	823159	823233	View	Gln	TTG	0	0	78.60	51.93	26.67	Both

chr	67	824722	824793	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	69	5203956	5203885	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	7	64526	64597	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	94	4648989	4648918	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	10	150501	150575	View	Glu	TTC	0	0	79.30	54.23	25.07	Both
chr	19	278581	278655	View	Glu	TTC	0	0	79.30	54.23	25.07	Both
chr	34	609961	610035	View	Glu	TTC	0	0	79.30	54.23	25.07	Both

chr	15	150984	151055	View	Gly	GCC	0	0	80.56	57.42	23.14	Both
chr	44	610888	610962	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	53	823438	823512	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	77	4650508	4650434	View	Gly	GCC	0	0	88.86	65.70	23.16	Both

chr	27	279452	279522	View	Gly	TCC	0	0	71.78	43.08	28.70	Both
chr	90	4649333	4649263	View	Gly	TCC	0	0	71.78	43.08	28.70	Both
chr	47	615179	615252	View	Gly	TCC	0	0	80.08	51.35	28.73	Both
chr	95	4248374	4248301	View	Gly	TCC	0	0	80.08	51.35	28.73	Both

chr	42	610669	610744	View	His	GTG	0	0	74.61	57.99	16.62	Both
chr	75	4650716	4650641	View	His	GTG	0	0	74.61	57.99	16.62	Both

chr	1	10991	11067	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	4	30765	30841	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	65	824561	824637	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	91	4649252	4649176	View	Ile	GAT	0	0	101.21	79.68	21.53	Both

chr	46	611058	611142	View	Leu	CAA	0	0	60.08	29.99	30.09	Both

chr	24	279114	279199	View	Leu	GAG	0	0	57.19	28.11	29.08	Both

chr	54	823529	823617	View	Leu	TAA	0	0	71.28	45.92	25.36	Both
chr	78	4650417	4650329	View	Leu	TAA	0	0	71.28	45.92	25.36	Both

chr	52	823328	823408	View	Leu	TAG	0	0	66.65	43.61	23.04	Both
chr	76	4650618	4650538	View	Leu	TAG	0	0	67.96	46.15	21.81	Both

chr	23	279025	279097	View	Lys	TTT	0	0	90.38	65.95	24.43	Both
chr	14	150903	150978	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	51	823238	823313	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	68	5204045	5203970	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	89	4649422	4649347	View	Lys	TTT	0	0	98.67	74.23	24.44	Both

chr	30	284925	285003	View	Met	CAT	0	0	66.09	41.68	24.41	Eufind
chr	6	64439	64512	View	Met	CAT	0	0	75.69	63.20	12.49	Both
chr	82	4650059	4649983	View	Met	CAT	0	0	83.99	71.47	12.52	Both
chr	28	284395	284471	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	36	610140	610216	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	60	824151	824227	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	97	4043277	4043204	View	Met	CAT	0	0	88.27	62.52	25.75	Both
chr	85	4649764	4649688	View	Met	CAT	0	0	89.08	63.85	25.23	Both
chr	83	4649978	4649902	View	Met	CAT	0	0	96.69	71.02	25.67	Both

chr	71	5203746	5203674	View	Phe	GAA	0	0	84.57	61.64	22.93	Both
chr	38	610305	610380	View	Phe	GAA	0	0	92.86	69.91	22.95	Both
chr	62	824316	824391	View	Phe	GAA	0	0	92.86	69.91	22.95	Both
chr	87	4649598	4649523	View	Phe	GAA	0	0	92.86	69.91	22.95	Both

chr	56	823705	823778	View	Pro	TGG	0	0	85.68	64.90	20.78	Both
chr	80	4650241	4650168	View	Pro	TGG	0	0	85.68	64.90	20.78	Both
chr	26	279374	279450	View	Pro	TGG	0	0	93.98	73.17	20.81	Both

chr	96	4246559	4246487	View	Pseudo	TTG	0	0	28.25	3.19	25.06	Eufind

chr	18	278482	278572	View	Ser	GCT	0	0	67.93	29.76	38.17	Both
chr	93	4649086	4648996	View	Ser	GCT	0	0	67.93	29.76	38.17	Both

chr	33	609852	609943	View	Ser	GGA	0	0	63.66	27.80	35.86	Both

chr	58	823887	823979	View	Ser	TGA	0	0	71.21	40.56	30.65	Both
chr	3	21771	21863	View	Ser	TGA	0	0	71.57	39.60	31.97	Both
chr	84	4649884	4649792	View	Ser	TGA	0	0	72.21	40.24	31.97	Both
chr	59	824031	824123	View	Ser	TGA	0	0	72.21	40.24	31.97	tRNAscan

chr	9	150404	150476	View	Thr	GGT	0	0	78.48	52.38	26.10	Both

chr	63	824401	824473	View	Thr	TGT	0	0	87.15	69.26	17.89	Both
chr	74	4650801	4650726	View	Thr	TGT	0	0	95.44	77.54	17.90	Both
chr	39	610399	610474	View	Thr	TGT	0	0	96.17	78.89	17.28	Both
chr	88	4649508	4649433	View	Thr	TGT	0	0	96.17	78.89	17.28	Both

chr	64	824480	824550	View	Trp	CCA	0	0	53.62	27.59	26.03	Both
chr	41	610576	610649	View	Trp	CCA	0	0	61.92	35.87	26.05	Both

chr	12	150674	150757	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both
chr	40	610485	610568	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both
chr	49	823064	823147	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both

chr	98	1389582	1389510	View	Val	GAC	0	0	61.20	42.10	19.10	Both

chr	11	150581	150656	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	20	278660	278735	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	35	610040	610115	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	48	822980	823055	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	73	4650881	4650806	View	Val	TAC	0	0	97.03	78.59	18.44	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.