tRNAscan-SE Analysis of the Bacillus cereus ATCC14579 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	25	156714	156786	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	65	724097	724169	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	90	4803079	4803007	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	16	87773	87848	View	Ala	TGC	0	0	93.92	76.70	17.22	Both
chr	2	10955	11030	View	Ala	TGC	0	0	93.92	76.70	17.22	Both
chr	5	30696	30771	View	Ala	TGC	0	0	93.92	76.70	17.22	Both

chr	14	87608	87681	View	Arg	ACG	0	0	69.97	55.63	14.34	Both
chr	63	723923	723996	View	Arg	ACG	0	0	69.97	55.63	14.34	Both
chr	88	4803252	4803179	View	Arg	ACG	0	0	69.97	55.63	14.34	Both
chr	35	244873	244949	View	Arg	ACG	0	0	78.27	63.91	14.36	Both

chr	81	5046768	5046690	View	Arg	CCG	0	0	62.69	41.89	20.80	Both

chr	105	4438429	4438353	View	Arg	TCT	0	0	79.49	52.49	27.00	Both

chr	40	514860	514934	View	Asn	GTT	0	0	86.53	59.59	26.94	Both
chr	101	4802093	4802019	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	17	155973	156047	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	26	243925	243999	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	74	724945	725019	View	Asn	GTT	0	0	88.32	61.39	26.93	Both

chr	31	244362	244437	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	39	250054	250129	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	45	515307	515382	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	69	724531	724606	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	79	5391250	5391175	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	95	4802611	4802536	View	Asp	GTC	0	0	76.06	54.53	21.53	Both

chr	53	516064	516134	View	Cys	GCA	0	0	71.27	44.01	27.26	Both

chr	22	156471	156545	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	32	244525	244599	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	51	515895	515969	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	58	723461	723535	View	Gln	TTG	0	0	78.60	51.93	26.67	Both

chr	103	4801915	4801844	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	7	64276	64347	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	75	725021	725092	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	78	5391344	5391273	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	19	156149	156223	View	Glu	TTC	0	0	79.30	54.23	25.07	Both
chr	28	244102	244176	View	Glu	TTC	0	0	79.30	54.23	25.07	Both
chr	42	515046	515120	View	Glu	TTC	0	0	79.30	54.23	25.07	Both

chr	24	156632	156703	View	Gly	GCC	0	0	80.56	57.42	23.14	Both
chr	12	87425	87499	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	52	515975	516049	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	61	723740	723814	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	86	4803435	4803361	View	Gly	GCC	0	0	88.86	65.70	23.16	Both

chr	37	245032	245102	View	Gly	TCC	0	0	71.78	43.08	28.70	Both
chr	99	4802258	4802188	View	Gly	TCC	0	0	71.78	43.08	28.70	Both
chr	104	4438504	4438431	View	Gly	TCC	0	0	80.08	51.35	28.73	Both
chr	55	520659	520732	View	Gly	TCC	0	0	80.08	51.35	28.73	Both

chr	50	515756	515831	View	His	GTG	0	0	74.61	57.99	16.62	Both
chr	84	4803643	4803568	View	His	GTG	0	0	74.61	57.99	16.62	Both

chr	1	10870	10946	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	100	4802177	4802101	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	4	30611	30687	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	73	724860	724936	View	Ile	GAT	0	0	101.21	79.68	21.53	Both

chr	54	516145	516229	View	Leu	CAA	0	0	60.08	29.99	30.09	Both

chr	34	244694	244779	View	Leu	GAG	0	0	57.19	28.11	29.08	Both

chr	13	87516	87604	View	Leu	TAA	0	0	71.28	45.92	25.36	Both
chr	62	723831	723919	View	Leu	TAA	0	0	71.28	45.92	25.36	Both
chr	87	4803344	4803256	View	Leu	TAA	0	0	71.28	45.92	25.36	Both

chr	11	87315	87395	View	Leu	TAG	0	0	66.65	43.61	23.04	Both
chr	60	723630	723710	View	Leu	TAG	0	0	66.65	43.61	23.04	Both
chr	85	4803545	4803465	View	Leu	TAG	0	0	67.96	46.15	21.81	Both

chr	33	244605	244677	View	Lys	TTT	0	0	90.38	65.95	24.43	Both
chr	23	156551	156626	View	Lys	TTT	0	0	90.99	66.55	24.44	Both
chr	10	87226	87301	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	59	723540	723615	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	77	5391433	5391358	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	98	4802347	4802272	View	Lys	TTT	0	0	98.67	74.23	24.44	Both

chr	6	64189	64262	View	Met	CAT	0	0	75.69	63.20	12.49	Both
chr	91	4802986	4802910	View	Met	CAT	0	0	83.99	71.47	12.52	Both
chr	30	244282	244358	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	38	249974	250050	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	44	515227	515303	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	68	724451	724527	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	94	4802691	4802615	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	106	4220245	4220172	View	Met	CAT	0	0	88.27	62.52	25.75	Both
chr	92	4802905	4802829	View	Met	CAT	0	0	96.69	71.02	25.67	Both

chr	80	5391133	5391061	View	Phe	GAA	0	0	84.57	61.64	22.93	Both
chr	46	515392	515467	View	Phe	GAA	0	0	92.86	69.91	22.95	Both
chr	70	724615	724690	View	Phe	GAA	0	0	92.86	69.91	22.95	Both
chr	96	4802523	4802448	View	Phe	GAA	0	0	92.86	69.91	22.95	Both

chr	15	87690	87763	View	Pro	TGG	0	0	85.68	64.90	20.78	Both
chr	64	724007	724080	View	Pro	TGG	0	0	85.68	64.90	20.78	Both
chr	89	4803168	4803095	View	Pro	TGG	0	0	85.68	64.90	20.78	Both
chr	36	244954	245030	View	Pro	TGG	0	0	93.98	73.17	20.81	Both

chr	76	2422653	2422723	View	Pseudo	CCA	0	0	25.11	24.79	0.32	Eufind

chr	27	244003	244093	View	Ser	GCT	0	0	67.68	30.02	37.66	Both
chr	102	4802011	4801921	View	Ser	GCT	0	0	67.93	29.76	38.17	Both

chr	41	514937	515028	View	Ser	GGA	0	0	63.66	27.80	35.86	Both

chr	66	724190	724282	View	Ser	TGA	0	0	71.21	40.56	30.65	Both
chr	3	21647	21739	View	Ser	TGA	0	0	71.57	39.60	31.97	Both
chr	67	724338	724430	View	Ser	TGA	0	0	72.21	40.24	31.97	Both
chr	93	4802811	4802719	View	Ser	TGA	0	0	72.21	40.24	31.97	Both

chr	18	156052	156124	View	Thr	GGT	0	0	78.48	52.38	26.10	Both

chr	71	724700	724775	View	Thr	TGT	0	0	88.49	71.21	17.28	Both
chr	83	4803728	4803653	View	Thr	TGT	0	0	95.44	77.54	17.90	Both
chr	9	87137	87212	View	Thr	TGT	0	0	95.44	77.54	17.90	Both
chr	97	4802433	4802358	View	Thr	TGT	0	0	95.44	77.54	17.90	Both
chr	47	515486	515561	View	Thr	TGT	0	0	96.17	78.89	17.28	Both

chr	72	724779	724849	View	Trp	CCA	0	0	53.62	27.59	26.03	Both
chr	49	515663	515736	View	Trp	CCA	0	0	61.92	35.87	26.05	Both

chr	21	156322	156405	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both
chr	48	515572	515655	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both
chr	57	723366	723449	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	108	1236366	1236294	View	Val	GAC	0	0	51.09	42.26	8.83	Eufind
chr	107	1251020	1250948	View	Val	GAC	0	0	63.07	42.04	21.03	Both

chr	20	156229	156304	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	29	244181	244256	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	43	515125	515200	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	56	723282	723357	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	8	87057	87132	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	82	4803808	4803733	View	Val	TAC	0	0	97.03	78.59	18.44	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.