tRNAscan-SE Analysis of the Bacillus anthracis str Sterne Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	16	151061	151133	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	54	746998	747070	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	78	4652396	4652324	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	2	11078	11153	View	Ala	TGC	0	0	93.92	76.70	17.22	Both
chr	5	30872	30947	View	Ala	TGC	0	0	93.92	76.70	17.22	Both

chr	52	746824	746897	View	Arg	ACG	0	0	69.97	55.63	14.34	Both
chr	76	4652569	4652496	View	Arg	ACG	0	0	69.97	55.63	14.34	Both
chr	25	245915	245991	View	Arg	ACG	0	0	78.27	63.91	14.36	Both

chr	69	4868777	4868699	View	Arg	CCG	0	0	62.69	41.89	20.80	Both

chr	93	4288076	4288000	View	Arg	TCT	0	0	79.49	52.49	27.00	Both

chr	30	537315	537389	View	Asn	GTT	0	0	86.53	59.59	26.94	Both
chr	17	245022	245096	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	63	747846	747920	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	8	150320	150394	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	89	4651412	4651338	View	Asn	GTT	0	0	88.32	61.39	26.93	Both

chr	21	245400	245475	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	29	251098	251173	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	35	537761	537836	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	58	747432	747507	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	67	5208235	5208160	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	83	4651930	4651855	View	Asp	GTC	0	0	76.06	54.53	21.53	Both

chr	43	538518	538588	View	Cys	GCA	0	0	71.27	44.01	27.26	Both

chr	13	150818	150892	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	22	245564	245638	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	41	538349	538423	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	47	746362	746436	View	Gln	TTG	0	0	78.60	51.93	26.67	Both

chr	64	747922	747993	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	66	5208327	5208256	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	7	64513	64584	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	91	4651233	4651162	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	10	150496	150570	View	Glu	TTC	0	0	72.70	47.63	25.07	Both
chr	19	245199	245273	View	Glu	TTC	0	0	75.64	51.91	23.73	Both
chr	32	537501	537575	View	Glu	TTC	0	0	79.30	54.23	25.07	Both

chr	15	150979	151050	View	Gly	GCC	0	0	80.56	57.42	23.14	Both
chr	42	538429	538503	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	50	746641	746715	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	74	4652752	4652678	View	Gly	GCC	0	0	88.86	65.70	23.16	Both

chr	27	246074	246144	View	Gly	TCC	0	0	71.78	43.08	28.70	Both
chr	87	4651577	4651507	View	Gly	TCC	0	0	71.78	43.08	28.70	Both
chr	45	543114	543187	View	Gly	TCC	0	0	80.08	51.35	28.73	Both
chr	92	4288151	4288078	View	Gly	TCC	0	0	80.08	51.35	28.73	Both

chr	40	538210	538285	View	His	GTG	0	0	74.61	57.99	16.62	Both
chr	72	4652960	4652885	View	His	GTG	0	0	74.61	57.99	16.62	Both

chr	1	10993	11069	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	4	30787	30863	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	88	4651496	4651420	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	62	747761	747837	View	Ile	GAT	0	0	94.98	78.12	16.86	Both

chr	44	538599	538683	View	Leu	CAA	0	0	60.08	29.99	30.09	Both

chr	24	245734	245819	View	Leu	GAG	0	0	57.19	28.11	29.08	Both

chr	51	746732	746820	View	Leu	TAA	0	0	71.28	45.92	25.36	Both
chr	75	4652661	4652573	View	Leu	TAA	0	0	71.28	45.92	25.36	Both

chr	49	746531	746611	View	Leu	TAG	0	0	66.65	43.61	23.04	Both
chr	73	4652862	4652782	View	Leu	TAG	0	0	67.96	46.15	21.81	Both

chr	23	245644	245716	View	Lys	TTT	0	0	90.38	65.95	24.43	Both
chr	14	150898	150973	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	48	746441	746516	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	65	5208416	5208341	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	86	4651666	4651591	View	Lys	TTT	0	0	98.67	74.23	24.44	Both

chr	6	64426	64499	View	Met	CAT	0	0	75.69	63.20	12.49	Both
chr	79	4652303	4652227	View	Met	CAT	0	0	78.26	72.05	6.21	Both
chr	34	537681	537757	View	Met	CAT	0	0	80.72	55.49	25.23	Both
chr	28	251018	251094	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	57	747351	747427	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	94	4095157	4095084	View	Met	CAT	0	0	88.27	62.52	25.75	Both
chr	82	4652008	4651932	View	Met	CAT	0	0	89.08	63.85	25.23	Both
chr	80	4652222	4652146	View	Met	CAT	0	0	96.69	71.02	25.67	Both

chr	68	5208118	5208046	View	Phe	GAA	0	0	84.57	61.64	22.93	Both
chr	84	4651842	4651767	View	Phe	GAA	0	0	86.60	69.51	17.09	Both
chr	36	537846	537921	View	Phe	GAA	0	0	92.86	69.91	22.95	Both
chr	59	747516	747591	View	Phe	GAA	0	0	92.86	69.91	22.95	Both

chr	53	746908	746981	View	Pro	TGG	0	0	85.68	64.90	20.78	Both
chr	77	4652485	4652412	View	Pro	TGG	0	0	85.68	64.90	20.78	Both
chr	26	245996	246072	View	Pro	TGG	0	0	93.98	73.17	20.81	Both

chr	18	245100	245190	View	Ser	GCT	0	0	67.93	29.76	38.17	Both
chr	90	4651330	4651240	View	Ser	GCT	0	0	67.93	29.76	38.17	Both

chr	31	537392	537483	View	Ser	GGA	0	0	63.66	27.80	35.86	Both

chr	55	747091	747183	View	Ser	TGA	0	0	71.21	40.56	30.65	Both
chr	3	21770	21862	View	Ser	TGA	0	0	71.57	39.60	31.97	Both
chr	56	747238	747330	View	Ser	TGA	0	0	71.91	38.44	33.47	tRNAscan
chr	81	4652128	4652036	View	Ser	TGA	0	0	72.21	40.24	31.97	Both

chr	9	150399	150471	View	Thr	GGT	0	0	78.48	52.38	26.10	Both

chr	60	747601	747673	View	Thr	TGT	0	0	87.87	70.62	17.25	Both
chr	71	4653045	4652970	View	Thr	TGT	0	0	92.70	74.80	17.90	Both
chr	37	537940	538015	View	Thr	TGT	0	0	96.17	78.89	17.28	Both
chr	85	4651752	4651677	View	Thr	TGT	0	0	96.17	78.89	17.28	Both

chr	61	747680	747750	View	Trp	CCA	0	0	53.62	27.59	26.03	Both
chr	39	538117	538190	View	Trp	CCA	0	0	61.92	35.87	26.05	Both

chr	12	150669	150752	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both
chr	38	538026	538109	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both

chr	95	1232618	1232546	View	Val	GAC	0	0	64.72	40.34	24.38	Both

chr	11	150576	150651	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	20	245278	245353	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	33	537581	537656	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	46	746275	746350	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	70	4653125	4653050	View	Val	TAC	0	0	97.03	78.59	18.44	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.