GtRNAdb

tRNAscan-SE Analysis of Bacillus anthracis str Sterne

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tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 16 151061 151133 Ala TGC taattactaa tctaatagag0 0 85.62 68.4317.19 Both
chr 54 746998 747070 Ala TGC caaaaaacat ctttatttat0 0 85.62 68.4317.19 Both
chr 78 4652396 4652324 Ala TGC ccaaaaacat cttatttcaa0 0 85.62 68.4317.19 Both
chr 2 11078 11153 Ala TGC catacaattt aaaagctatt0 0 93.92 76.7017.22 Both
chr 5 30872 30947 Ala TGC catacaattt aaaagctatt0 0 93.92 76.7017.22 Both
 
chr 52 746824 746897 Arg ACG ggcaccatat cttttattaa0 0 69.97 55.6314.34 Both
chr 76 4652569 4652496 Arg ACG ggcaccatat cttttattaa0 0 69.97 55.6314.34 Both
chr 25 245915 245991 Arg ACG tcatgaataa attacgggaa0 0 78.27 63.9114.36 Both
chr 69 4868777 4868699 Arg CCG ttataattat aaaagtccta0 0 62.69 41.8920.80 Both
chr 93 4288076 4288000 Arg TCT cccgctccat aaaaaacctt0 0 79.49 52.4927.00 Both
 
chr 30 537315 537389 Asn GTT gcaatattat ttggagagct0 0 86.53 59.5926.94 Both
chr 17 245022 245096 Asn GTT tctttattat tacagagaag0 0 88.32 61.3926.93 Both
chr 63 747846 747920 Asn GTT catatattat tggcccgttg0 0 88.32 61.3926.93 Both
chr 8 150320 150394 Asn GTT ctaatattat ttatgcttcc0 0 88.32 61.3926.93 Both
chr 89 4651412 4651338 Asn GTT ccataattgt tatttataga0 0 88.32 61.3926.93 Both
 
chr 21 245400 245475 Asp GTC aagattaaat ttttaacttc0 0 76.06 54.5321.53 Both
chr 29 251098 251173 Asp GTC gcaaccaaat ttttatataa0 0 76.06 54.5321.53 Both
chr 35 537761 537836 Asp GTC gcaaccaaat ttttaataag0 0 76.06 54.5321.53 Both
chr 58 747432 747507 Asp GTC caaccaaaat tttatgttgg0 0 76.06 54.5321.53 Both
chr 67 5208235 5208160 Asp GTC gttcattttt cttttgttta0 0 76.06 54.5321.53 Both
chr 83 4651930 4651855 Asp GTC ccgcaaccaa tttttacata0 0 76.06 54.5321.53 Both
 
chr 43 538518 538588 Cys GCA aattttatat tttcttttgt0 0 71.27 44.0127.26 Both
 
chr 13 150818 150892 Gln TTG taaatattaa tttacgagcc0 0 78.60 51.9326.67 Both
chr 22 245564 245638 Gln TTG agtatttcga tttacgagcc0 0 78.60 51.9326.67 Both
chr 41 538349 538423 Gln TTG aagaattcga tttttgcgga0 0 78.60 51.9326.67 Both
chr 47 746362 746436 Gln TTG tcttaattaa ttaagagcca0 0 78.60 51.9326.67 Both
 
chr 64 747922 747993 Glu TTC gcggagccat taaaaaaaag0 0 71.01 45.9625.05 Both
chr 66 5208327 5208256 Glu TTC tatttttcgt tgttttttat0 0 71.01 45.9625.05 Both
chr 7 64513 64584 Glu TTC ttaatttaac tctaaaaaga0 0 71.01 45.9625.05 Both
chr 91 4651233 4651162 Glu TTC gccagtaatt tactaaaaga0 0 71.01 45.9625.05 Both
chr 10 150496 150570 Glu TTC aaactttttt cttttggagg0 0 72.70 47.6325.07 Both
chr 19 245199 245273 Glu TTC cattcatatt cttcggagga0 0 75.64 51.9123.73 Both
chr 32 537501 537575 Glu TTC tataatattt cttttggagg0 0 79.30 54.2325.07 Both
 
chr 15 150979 151050 Gly GCC caccattttc taattactaa0 0 80.56 57.4223.14 Both
chr 42 538429 538503 Gly GCC agccattttt gtaaaatttt0 0 88.86 65.7023.16 Both
chr 50 746641 746715 Gly GCC tacatgtctt attttcaata0 0 88.86 65.7023.16 Both
chr 74 4652752 4652678 Gly GCC tacatgtctt attttcaata0 0 88.86 65.7023.16 Both
chr 27 246074 246144 Gly TCC tcccgaccac tttagttctt0 0 71.78 43.0828.70 Both
chr 87 4651577 4651507 Gly TCC acaatttaat tttcaattat0 0 71.78 43.0828.70 Both
chr 45 543114 543187 Gly TCC tttcatattt aattttatta0 0 80.08 51.3528.73 Both
chr 92 4288151 4288078 Gly TCC aataacatat tgtcccagta0 0 80.08 51.3528.73 Both
 
chr 40 538210 538285 His GTG acacaacatg tttttatttt0 0 74.61 57.9916.62 Both
chr 72 4652960 4652885 His GTG agaaatcatg tttttcttaa0 0 74.61 57.9916.62 Both
 
chr 1 10993 11069 Ile GAT aaatttgtat tacaatttgg0 0 101.21 79.6821.53 Both
chr 4 30787 30863 Ile GAT aaatttgtat tacaatttgg0 0 101.21 79.6821.53 Both
chr 88 4651496 4651420 Ile GAT tttcaattat taattgttcc0 0 101.21 79.6821.53 Both
chr 62 747761 747837 Ile GAT taaagtatat tatattattc0 0 94.98 78.1216.86 Both
 
chr 44 538599 538683 Leu CAA tttcttttgt cgaacggcgt0 0 60.08 29.9930.09 Both
chr 24 245734 245819 Leu GAG tttttttcgc aaaatctttt0 0 57.19 28.1129.08 Both
chr 51 746732 746820 Leu TAA aatatgacat tatgcgcccg0 0 71.28 45.9225.36 Both
chr 75 4652661 4652573 Leu TAA aatatgacat tatgcgcccg0 0 71.28 45.9225.36 Both
chr 49 746531 746611 Leu TAG aacaaaatat cttttaataa0 0 66.65 43.6123.04 Both
chr 73 4652862 4652782 Leu TAG aaattaatat cttttaatta0 0 67.96 46.1521.81 Both
 
chr 23 245644 245716 Lys TTT agccatttac cttttgtttt0 0 90.38 65.9524.43 Both
chr 14 150898 150973 Lys TTT agccatttac ttttcgcgga0 0 98.67 74.2324.44 Both
chr 48 746441 746516 Lys TTT cagccattaa ttttaacaaa0 0 98.67 74.2324.44 Both
chr 65 5208416 5208341 Lys TTT tggtgagtat ttttattttt0 0 98.67 74.2324.44 Both
chr 86 4651666 4651591 Lys TTT ctttcaaaat tttacaattt0 0 98.67 74.2324.44 Both
 
chr 6 64426 64499 Met CAT aagacgacat tatttaattt0 0 75.69 63.2012.49 Both
chr 79 4652303 4652227 Met CAT tatcatttat taaaggacct0 0 78.26 72.056.21 Both
chr 34 537681 537757 Met CAT ataatattat aatggtcccg0 0 80.72 55.4925.23 Both
chr 28 251018 251094 Met CAT tttatatcat aatggtcccg0 0 85.35 60.1225.23 Both
chr 57 747351 747427 Met CAT tttatattgt aaatggtccc0 0 85.35 60.1225.23 Both
chr 94 4095157 4095084 Met CAT atataattgt tatccatttc0 0 88.27 62.5225.75 Both
chr 82 4652008 4651932 Met CAT attttatcgt aggtcccgtg0 0 89.08 63.8525.23 Both
chr 80 4652222 4652146 Met CAT ctaccataaa ttagaagttt0 0 96.69 71.0225.67 Both
 
chr 68 5208118 5208046 Phe GAA atatagtttt ctctcaggat0 0 84.57 61.6422.93 Both
chr 84 4651842 4651767 Phe GAA tttacataaa ttttgaagtc0 0 86.60 69.5117.09 Both
chr 36 537846 537921 Phe GAA attttaataa tttactttaa0 0 92.86 69.9122.95 Both
chr 59 747516 747591 Phe GAA catttatgtt tttttttatg0 0 92.86 69.9122.95 Both
 
chr 53 746908 746981 Pro TGG cttttattaa tattaccaaa0 0 85.68 64.9020.78 Both
chr 77 4652485 4652412 Pro TGG cttttattaa tattcccaaa0 0 85.68 64.9020.78 Both
chr 26 245996 246072 Pro TGG gcgccaatta cgcgggtgta0 0 93.98 73.1720.81 Both
 
chr 18 245100 245190 Ser GCT ggagccatac ttcatattgg0 0 67.93 29.7638.17 Both
chr 90 4651330 4651240 Ser GCT ccatatttat gtaattggcc0 0 67.93 29.7638.17 Both
chr 31 537392 537483 Ser GGA cggagccatt taggatttat0 0 63.66 27.8035.86 Both
chr 55 747091 747183 Ser TGA tatatgtctc ttttcttttt0 0 71.21 40.5630.65 Both
chr 3 21770 21862 Ser TGA atgtcaatat gatataattg0 0 71.57 39.6031.97 Both
chr 56 747238 747330 Ser TGA tttccttcat ttttttaaat0 0 71.91 38.4433.47 tRNAscan
chr 81 4652128 4652036 Ser TGA tttatatctc ttttttctta0 0 72.21 40.2431.97 Both
 
chr 9 150399 150471 Thr GGT gagccattat tgggaatagg0 0 78.48 52.3826.10 Both
chr 60 747601 747673 Thr TGT atttttttat tcctttaggg0 0 87.87 70.6217.25 Both
chr 71 4653045 4652970 Thr TGT ccaccattta gaaatcatgg0 0 92.70 74.8017.90 Both
chr 37 537940 538015 Thr TGT aataaaatac tgtaagtttc0 0 96.17 78.8917.28 Both
chr 85 4651752 4651677 Thr TGT gaagtcgcaa ctttcaaaat0 0 96.17 78.8917.28 Both
 
chr 61 747680 747750 Trp CCA ggcatccttt taaagtatat0 0 53.62 27.5926.03 Both
chr 39 538117 538190 Trp CCA ccatttacat aatatattta0 0 61.92 35.8726.05 Both
 
chr 12 150669 150752 Tyr GTA ttaaaatgtc ttttctttaa0 0 77.59 48.0029.59 Both
chr 38 538026 538109 Tyr GTA tgtaagtttc tttacatagg0 0 77.59 48.0029.59 Both
 
chr 95 1232618 1232546 Val GAC gcattttgaa taaaacctaa0 0 64.72 40.3424.38 Both
chr 11 150576 150651 Val TAC caccactttt tatatattta0 0 97.03 78.5918.44 Both
chr 20 245278 245353 Val TAC tcaccacttc taatattata0 0 97.03 78.5918.44 Both
chr 33 537581 537656 Val TAC caccactttt tataaactat0 0 97.03 78.5918.44 Both
chr 46 746275 746350 Val TAC caggcaaaat ttcttaatta0 0 97.03 78.5918.44 Both
chr 70 4653125 4653050 Val TAC ccaggcaaat tttagccgac0 0 97.03 78.5918.44 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.