tRNAscan-SE Analysis of the Bacillus anthracis Ames Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	10992	11068	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	2	11077	11152	View	Ala	TGC	0	0	93.92	76.70	17.22	Both
chr	3	21769	21861	View	Ser	TGA	0	0	71.57	39.60	31.97	Both
chr	4	30786	30862	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	5	30871	30946	View	Ala	TGC	0	0	93.92	76.70	17.22	Both
chr	6	64425	64498	View	Met	CAT	0	0	75.69	63.20	12.49	Both
chr	7	64512	64583	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	8	150319	150393	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	9	150398	150470	View	Thr	GGT	0	0	78.48	52.38	26.10	Both
chr	10	150495	150569	View	Glu	TTC	0	0	72.70	47.63	25.07	Both
chr	11	150575	150650	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	12	150668	150751	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both
chr	13	150817	150891	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	14	150897	150972	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	15	150978	151049	View	Gly	GCC	0	0	80.56	57.42	23.14	Both
chr	16	151060	151132	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	17	245009	245083	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	18	245087	245177	View	Ser	GCT	0	0	67.93	29.76	38.17	Both
chr	19	245186	245260	View	Glu	TTC	0	0	79.30	54.23	25.07	Both
chr	20	245265	245340	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	21	245387	245462	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	22	245551	245625	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	23	245631	245703	View	Lys	TTT	0	0	90.38	65.95	24.43	Both
chr	24	245721	245806	View	Leu	GAG	0	0	57.19	28.11	29.08	Both
chr	25	245902	245978	View	Arg	ACG	0	0	78.27	63.91	14.36	Both
chr	26	245983	246059	View	Pro	TGG	0	0	93.98	73.17	20.81	Both
chr	27	246061	246131	View	Gly	TCC	0	0	71.78	43.08	28.70	Both
chr	28	251005	251081	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	29	251085	251160	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	30	537272	537346	View	Asn	GTT	0	0	86.53	59.59	26.94	Both
chr	31	537349	537440	View	Ser	GGA	0	0	63.66	27.80	35.86	Both
chr	32	537458	537532	View	Glu	TTC	0	0	79.30	54.23	25.07	Both
chr	33	537538	537613	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	34	537638	537714	View	Met	CAT	0	0	80.72	55.49	25.23	Both
chr	35	537718	537793	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	36	537803	537878	View	Phe	GAA	0	0	92.86	69.91	22.95	Both
chr	37	537897	537972	View	Thr	TGT	0	0	96.17	78.89	17.28	Both
chr	38	537983	538066	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both
chr	39	538074	538147	View	Trp	CCA	0	0	61.92	35.87	26.05	Both
chr	40	538167	538242	View	His	GTG	0	0	74.61	57.99	16.62	Both
chr	41	538306	538380	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	42	538386	538460	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	43	538475	538545	View	Cys	GCA	0	0	71.27	44.01	27.26	Both
chr	44	538556	538640	View	Leu	CAA	0	0	60.08	29.99	30.09	Both
chr	45	543071	543144	View	Gly	TCC	0	0	80.08	51.35	28.73	Both
chr	46	746379	746454	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	47	746466	746540	View	Gln	TTG	0	0	78.60	51.93	26.67	Both
chr	48	746545	746620	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	49	746635	746715	View	Leu	TAG	0	0	66.65	43.61	23.04	Both
chr	50	746745	746819	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	51	746836	746924	View	Leu	TAA	0	0	71.28	45.92	25.36	Both
chr	52	746928	747001	View	Arg	ACG	0	0	69.97	55.63	14.34	Both
chr	53	747012	747085	View	Pro	TGG	0	0	85.68	64.90	20.78	Both
chr	54	747102	747174	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	55	747195	747287	View	Ser	TGA	0	0	71.21	40.56	30.65	Both
chr	56	747342	747434	View	Ser	TGA	0	0	71.91	38.44	33.47	tRNAscan
chr	57	747455	747531	View	Met	CAT	0	0	85.35	60.12	25.23	Both
chr	58	747536	747611	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	59	747620	747695	View	Phe	GAA	0	0	92.86	69.91	22.95	Both
chr	60	747705	747777	View	Thr	TGT	0	0	87.87	70.62	17.25	Both
chr	61	747784	747854	View	Trp	CCA	0	0	53.62	27.59	26.03	Both
chr	62	747865	747941	View	Ile	GAT	0	0	94.98	78.12	16.86	Both
chr	63	747950	748024	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	64	748026	748097	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	65	5207045	5206970	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	66	5206956	5206885	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	67	5206864	5206789	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	68	5206747	5206675	View	Phe	GAA	0	0	84.57	61.64	22.93	Both
chr	69	4867440	4867362	View	Arg	CCG	0	0	62.69	41.89	20.80	Both
chr	70	4651903	4651828	View	Val	TAC	0	0	97.03	78.59	18.44	Both
chr	71	4651823	4651748	View	Thr	TGT	0	0	92.70	74.80	17.90	Both
chr	72	4651738	4651663	View	His	GTG	0	0	74.61	57.99	16.62	Both
chr	73	4651640	4651560	View	Leu	TAG	0	0	67.96	46.15	21.81	Both
chr	74	4651530	4651456	View	Gly	GCC	0	0	88.86	65.70	23.16	Both
chr	75	4651439	4651351	View	Leu	TAA	0	0	71.28	45.92	25.36	Both
chr	76	4651347	4651274	View	Arg	ACG	0	0	69.97	55.63	14.34	Both
chr	77	4651263	4651190	View	Pro	TGG	0	0	85.68	64.90	20.78	Both
chr	78	4651174	4651102	View	Ala	TGC	0	0	85.62	68.43	17.19	Both
chr	79	4651081	4651004	View	Met	CAT	0	0	72.67	66.46	6.21	Both
chr	80	4650999	4650923	View	Met	CAT	0	0	96.69	71.02	25.67	Both
chr	81	4650905	4650813	View	Ser	TGA	0	0	72.21	40.24	31.97	Both
chr	82	4650785	4650709	View	Met	CAT	0	0	89.08	63.85	25.23	Both
chr	83	4650707	4650632	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
chr	84	4650619	4650544	View	Phe	GAA	0	0	86.60	69.51	17.09	Both
chr	85	4650529	4650454	View	Thr	TGT	0	0	96.17	78.89	17.28	Both
chr	86	4650443	4650368	View	Lys	TTT	0	0	98.67	74.23	24.44	Both
chr	87	4650354	4650284	View	Gly	TCC	0	0	71.78	43.08	28.70	Both
chr	88	4650273	4650197	View	Ile	GAT	0	0	101.21	79.68	21.53	Both
chr	89	4650189	4650115	View	Asn	GTT	0	0	88.32	61.39	26.93	Both
chr	90	4650107	4650017	View	Ser	GCT	0	0	67.93	29.76	38.17	Both
chr	91	4650010	4649939	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
chr	92	4287652	4287579	View	Gly	TCC	0	0	80.08	51.35	28.73	Both
chr	93	4287577	4287501	View	Arg	TCT	0	0	79.49	52.49	27.00	Both
chr	94	4094657	4094584	View	Met	CAT	0	0	88.27	62.52	25.75	Both
chr	95	1232550	1232478	View	Val	GAC	0	0	64.72	40.34	24.38	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.