tRNAscan-SE Analysis of the Bacillus anthracis A2012 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

,_unfinished_sequence.trna34 (209104-209026)	Length: 79 bp
Type: Arg	Anticodon: CCG at 35-37 (209070-209068)	Score: 62.69
Seq: GCGCCCATAGCTCAGTCGGAtAGAGCGGTGGTTTCCGGTACCACGTCTGcCGGGGGTTCGAATCCCTCTGGGCGCGTCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.......>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna4 (784437-784508)	Length: 72 bp
Type: Asn	Anticodon: GTT at 33-35 (784469-784471)	Score: 45.62
Seq: TCCGCAGTAGCTCAGTGGTAGAGCTATCGGATGTTAACCGATCGGtCGTAGGTTCGANNnnNNNNNNNNNNN
Str: .........>>>>.......<<<<.>>>>>.......<<<<<..............................

,_unfinished_sequence.trna19 (1250303-1250376)	Length: 74 bp
Type: Asn	Anticodon: GTT at 33-35 (1250335-1250337)	Score: 77.34
Seq: TCCGCAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGtCGTAGGTTCAGTCCTACCTGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>......<<<<<<<<<<<<....

,_unfinished_sequence.trna25 (5092950-5092876)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (5092918-5092916)	Score: 82.05
Seq: TCCGCAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGtCGTAGGTTCGAGTCCTACCTGCKGAGCCA
Str: >>.>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<.<<....

,_unfinished_sequence.trna32 (547398-547323)	Length: 76 bp
Type: Asp	Anticodon: GTC at 34-36 (547365-547363)	Score: 76.06
Seq: GGTCCCGTGGTGTAGTGGTtAACATGCCTGCCTGTCACGCAGGAGAtCGCCGGTTCGACCCCGGTCGGGACCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna6 (784682-784757)	Length: 76 bp
Type: Asp	Anticodon: GTC at 34-36 (784715-784717)	Score: 76.06
Seq: GGTCCCGTGGTGTAGTGGTtAACATGCCTGCCTGTCACGCAGGAGAtCGCCGGTTCGACCCCGGTCGGGACCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna8 (1048640-1048715)	Length: 76 bp
Type: Asp	Anticodon: GTC at 34-36 (1048673-1048675)	Score: 76.06
Seq: GGTCCCGTGGTGTAGTGGTtAACATGCCTGCCTGTCACGCAGGAGAtCGCCGGTTCGACCCCGGTCGGGACCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna16 (1049396-1049466)	Length: 71 bp
Type: Cys	Anticodon: GCA at 33-35 (1049428-1049430)	Score: 71.27
Seq: GGCGGCATAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTTTAtCACCGGTTCAAATCCGGTTGCCGCCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

,_unfinished_sequence.trna14 (1049227-1049301)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (1049259-1049261)	Score: 78.60
Seq: TGGGCTATAGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTCATgCGCTGGTTCGAATCCAGCTAGCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna20 (1250378-1250449)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (1250411-1250413)	Score: 71.01
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

,_unfinished_sequence.trna27 (5092771-5092700)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (5092738-5092736)	Score: 71.01
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

,_unfinished_sequence.trna3 (621633-621704)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (621666-621668)	Score: 71.01
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

,_unfinished_sequence.trna31 (547490-547419)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (547457-547455)	Score: 71.01
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

,_unfinished_sequence.trna15 (1049307-1049381)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (1049339-1049341)	Score: 88.86
Seq: GCGGAAGTAGTTCAGTGGTAGAATACAACCTTGCCAAGGTTGGGGtCGCGGGTTCGAATCCCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna18 (1053988-1054061)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (1054020-1054022)	Score: 60.03
Seq: TCCGGAGTAGTTTAGTGGTAAAACAAGAGCCTTCCAAGCTCTGGtCGAGAGTTCGATTCTCTTCACCCGCTCCA
Str: .>.>>.>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<.<<.<.....

,_unfinished_sequence.trna13 (1049088-1049163)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (1049121-1049123)	Score: 74.61
Seq: GCGGTTGTGGCGAAGTGGTtAACGCACCGGATTGTGGCTCCGGCATtCGTGGGTTCGATTCCCATCAGTCGCCCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna17 (1049477-1049561)	Length: 85 bp
Type: Leu	Anticodon: CAA at 35-37 (1049511-1049513)	Score: 60.08
Seq: GCCGATGTGGCGGAATTGGCaGACGCGCACGACTCAAAATCGTGTTCCTTCGGGAGTGTCGGTTCGACCCCGACCATCGGTATCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna30 (547579-547504)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (547546-547544)	Score: 98.67
Seq: GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCGAAGGTTCGAGTCCTTCATGGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna7 (1048561-1048636)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (1048594-1048596)	Score: 69.29
Seq: CGCGGGGTGGAGCAGCACGTtAGCTCACGGGCTCATAACCCGAAGGtCGCAGGTTCAAATCCTGTCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>.......<<<<......>>>>>.......<<<<<<<<<<<.....

,_unfinished_sequence.trna2 (621546-621619)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (621580-621582)	Score: 75.69
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTACGGTTCATACCCGTGAGGtCGGGGGTTCGATCCCCTCCGCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

,_unfinished_sequence.trna5 (784602-784678)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (784636-784638)	Score: 85.35
Seq: CGCGGGGTGGAGCAGCAcGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGCAGGTTCAAATCCTGTCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

,_unfinished_sequence.trna28 (4540320-4540247)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (4540286-4540284)	Score: 88.27
Seq: GGACCCTTAGCTCAGCTGGTtAGAGCAGACGGCTCATAACCGTCCGGtCGTAGGTTCGAGTCCTACAGGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

,_unfinished_sequence.trna33 (547281-547209)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (547248-547246)	Score: 84.57
Seq: GGCTCGGTAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCGGCGGTTCGATTCCGTCCCGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

,_unfinished_sequence.trna22 (5093322-5093247)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (5093289-5093287)	Score: 86.60
Seq: GGCTCGGTAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCGGCGGTTCGATTCCGTCCCGATCCACCA
Str: >>.>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<.<<....

,_unfinished_sequence.trna9 (1048725-1048800)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (1048758-1048760)	Score: 92.86
Seq: GGCTCGGTAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCGGCGGTTCGATTCCGTCCCGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna24 (5093146-5093088)	Length: 59 bp
Type: Lys	Anticodon: TTT at 34-36 (5093113-5093111)	Score: 27.20
Seq: GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGGTCGAAGNNNNNN
Str: ....>.>..>>>>........<<<<.>>>>>.......<<<<<.......<.<......

,_unfinished_sequence.trna26 (5092868-5092778)	Length: 91 bp
Type: Ser	Anticodon: GCT at 35-37 (5092834-5092832)	Score: 67.93
Seq: AGAGAAGTACCCAAGTGGCtcAAGGGGCTCCCCTGCTAAGGGAGTAGATCGCGAACGCGGTGCGAGGGTTCGAATCCCTTCTTCTCTGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna1 (584432-584524)	Length: 93 bp
Type: Ser	Anticodon: TGA at 37-39 (584468-584470)	Score: 71.57
Seq: GGAGGTATACCCAAGTCtGGCtgAAGGGATCGGTCTTGAAAACCGACAGGCGGCGAGAGTCGCGCGGGGGTTCGAATCCCTCTACCTCCTCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna21 (5093554-5093462)	Length: 93 bp
Type: Ser	Anticodon: TGA at 37-39 (5093518-5093516)	Score: 71.57
Seq: GGAGGTATACCCAAGTCtGGCtgAAGGGATCGGTCTTGAAAACCGACAGGCGGCGAGAGTCGCGCGGGGGTTCGAATCCCTCTACCTCCTCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna10 (1048819-1048894)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (1048852-1048854)	Score: 96.17
Seq: GCCGGCTTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTGGGGGTTCAAGTCCTCTAGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna23 (5093232-5093157)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (5093199-5093197)	Score: 96.17
Seq: GCCGGCTTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTGGGGGTTCAAGTCCTCTAGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna11 (1048905-1048988)	Length: 84 bp
Type: Tyr	Anticodon: GTA at 35-37 (1048939-1048941)	Score: 77.59
Seq: GGAGGGGTAGCGAAGTGGCtaAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTtCGGCAGTTCGAATCTGCCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..<<<...>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna12 (1048996-1049068)	Length: 73 bp
Type: Undet	Anticodon: ??? at 0-0 (0-0)	Score: 53.73
Seq: AGGGGCATAGTTTAAAGGTAGAACTGAGGTCTGAAAACCTCCAGTGTGGGTTCGATTCCTACTGCCCCTGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>......<<<<<....>>>>>.......<<<<<<<<<<<<....

,_unfinished_sequence.trna29 (1725129-1725057)	Length: 73 bp
Type: Val	Anticodon: GAC at 34-36 (1725096-1725094)	Score: 64.72
Seq: GATCCCGTAGCTCAGCAGGGAGAGCGCCACCTTGACAGGGTGGAGGtCGTGAGTTCGAGCCTCTCCGGGATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.