tRNAscan-SE Analysis of the Bacillus anthracis A2012 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

,_unfinished_sequence	34	209104	209026	View	Arg	CCG	0	0	62.69	41.89	20.80	Both

,_unfinished_sequence	4	784437	784508	View	Asn	GTT	0	0	45.62	31.38	14.24	Eufind
,_unfinished_sequence	19	1250303	1250376	View	Asn	GTT	0	0	77.34	50.41	26.93	Eufind
,_unfinished_sequence	25	5092950	5092876	View	Asn	GTT	0	0	82.05	60.98	21.07	Both

,_unfinished_sequence	32	547398	547323	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
,_unfinished_sequence	6	784682	784757	View	Asp	GTC	0	0	76.06	54.53	21.53	Both
,_unfinished_sequence	8	1048640	1048715	View	Asp	GTC	0	0	76.06	54.53	21.53	Both

,_unfinished_sequence	16	1049396	1049466	View	Cys	GCA	0	0	71.27	44.01	27.26	Both

,_unfinished_sequence	14	1049227	1049301	View	Gln	TTG	0	0	78.60	51.93	26.67	Both

,_unfinished_sequence	20	1250378	1250449	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
,_unfinished_sequence	27	5092771	5092700	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
,_unfinished_sequence	3	621633	621704	View	Glu	TTC	0	0	71.01	45.96	25.05	Both
,_unfinished_sequence	31	547490	547419	View	Glu	TTC	0	0	71.01	45.96	25.05	Both

,_unfinished_sequence	15	1049307	1049381	View	Gly	GCC	0	0	88.86	65.70	23.16	Both

,_unfinished_sequence	18	1053988	1054061	View	Gly	TCC	0	0	60.03	46.71	13.32	Eufind

,_unfinished_sequence	13	1049088	1049163	View	His	GTG	0	0	74.61	57.99	16.62	Both

,_unfinished_sequence	17	1049477	1049561	View	Leu	CAA	0	0	60.08	29.99	30.09	Both

,_unfinished_sequence	30	547579	547504	View	Lys	TTT	0	0	98.67	74.23	24.44	Both

,_unfinished_sequence	7	1048561	1048636	View	Met	CAT	0	0	69.29	46.80	22.49	Eufind
,_unfinished_sequence	2	621546	621619	View	Met	CAT	0	0	75.69	63.20	12.49	Both
,_unfinished_sequence	5	784602	784678	View	Met	CAT	0	0	85.35	60.12	25.23	Both
,_unfinished_sequence	28	4540320	4540247	View	Met	CAT	0	0	88.27	62.52	25.75	Both

,_unfinished_sequence	33	547281	547209	View	Phe	GAA	0	0	84.57	61.64	22.93	Both
,_unfinished_sequence	22	5093322	5093247	View	Phe	GAA	0	0	86.60	69.51	17.09	Both
,_unfinished_sequence	9	1048725	1048800	View	Phe	GAA	0	0	92.86	69.91	22.95	Both

,_unfinished_sequence	24	5093146	5093088	View	Pseudo	TTT	0	0	27.20	9.77	17.43	Eufind

,_unfinished_sequence	26	5092868	5092778	View	Ser	GCT	0	0	67.93	29.76	38.17	Both

,_unfinished_sequence	1	584432	584524	View	Ser	TGA	0	0	71.57	39.60	31.97	Both
,_unfinished_sequence	21	5093554	5093462	View	Ser	TGA	0	0	71.57	39.60	31.97	Both

,_unfinished_sequence	10	1048819	1048894	View	Thr	TGT	0	0	96.17	78.89	17.28	Both
,_unfinished_sequence	23	5093232	5093157	View	Thr	TGT	0	0	96.17	78.89	17.28	Both

,_unfinished_sequence	11	1048905	1048988	View	Tyr	GTA	0	0	77.59	48.00	29.59	Both

,_unfinished_sequence	12	1048996	1049068	View	Undet	???	0	0	53.73	31.43	22.30	Eufind

,_unfinished_sequence	29	1725129	1725057	View	Val	GAC	0	0	64.72	40.34	24.38	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.