tRNAscan-SE Analysis of the Bacillus anthracis A2012 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs








Arg tRNAs




>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
GCGCCCATAGCTCAGTCGGAtAGAGCGGTGGTTTCCGGTACCACGTCT........GcCGGGGGTTCGAATCCCTC.TGGGCGCGTCA ,_unfinished_sequence.trna34-ArgCCG Sc: 62.69  






Asn tRNAs



>>.>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>........<<<<<<<<<.<<....
TCCGCAGTAGCTCAGTGGTA.GAGCTATCGGCTGTTAACCGATCG...........GtCGTAGGTTCGAGT.CCTACCTGCKGAGCCA ,_unfinished_sequence.trna25-AsnGTT Sc: 82.05  
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>........<<<<<<<<<<<<....
TCCGCAGTAGCTCAGTGGTA.GAGCTATCGGCTGTTAACCGATCG...........GtCGTAGGTTC.AGT.CCTACCTGCGGAGCCA ,_unfinished_sequence.trna19-AsnGTT Sc: 77.34  
.........>>>>........<<<<.>>>>>.......<<<<<.............................................
TCCGCAGTAGCTCAGTGGTA.GAGCTATCGGATGTTAACCGATCG...........GtCGTAGGTTCGANN.NNNNNNNNNNNNN... ,_unfinished_sequence.trna4-AsnGTT Sc: 45.62  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCCCGTGGTGTAGTGGTtA.ACATGCCTGCCTGTCACGCAGGAG...........AtCGCCGGTTCGACCCCGGTCGGGACCGCCA ,_unfinished_sequence.trna8-AspGTC Sc: 76.06  
GGTCCCGTGGTGTAGTGGTtA.ACATGCCTGCCTGTCACGCAGGAG...........AtCGCCGGTTCGACCCCGGTCGGGACCGCCA ,_unfinished_sequence.trna6-AspGTC Sc: 76.06  
GGTCCCGTGGTGTAGTGGTtA.ACATGCCTGCCTGTCACGCAGGAG...........AtCGCCGGTTCGACCCCGGTCGGGACCGCCA ,_unfinished_sequence.trna32-AspGTC Sc: 76.06  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
GGCGGCATAGCCAAGTGGTA.AGGCAGAGGTCTGCAAAACCTTT...........AtCACCGGTTCAAATCCGGT.TGCCGCCT... ,_unfinished_sequence.trna16-CysGCA Sc: 71.27  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGCTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTCA...........TgCGCTGGTTCGAATCCAGCTAGCCCAGCCA ,_unfinished_sequence.trna14-GlnTTG Sc: 78.60  



Glu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCA... ,_unfinished_sequence.trna31-GluTTC Sc: 71.01  
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCA... ,_unfinished_sequence.trna3-GluTTC Sc: 71.01  
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCA... ,_unfinished_sequence.trna27-GluTTC Sc: 71.01  
GGCCCGTTGGTCAAGTGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCA... ,_unfinished_sequence.trna20-GluTTC Sc: 71.01  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGGAAGTAGTTCAGTGGTA.GAATACAACCTTGCCAAGGTTGGG...........GtCGCGGGTTCGAATCCCGT.CTTCCGCTCCA ,_unfinished_sequence.trna15-GlyGCC Sc: 88.86  


.>.>>.>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<.<<.<.....
TCCGGAGTAGTTTAGTGGTA.AAACAAGAGCCTTCCAAGCTCTG............GtCGAGAGTTCGATTCTCTT.CACCCGCTCCA ,_unfinished_sequence.trna18-GlyTCC Sc: 60.03  



His tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGTTGTGGCGAAGTGGTtA.ACGCACCGGATTGTGGCTCCGGCA...........TtCGTGGGTTCGATTCCCATCAGTCGCCCCA ,_unfinished_sequence.trna13-HisGTG Sc: 74.61  



Ile tRNAs







Leu tRNAs






>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGATGTGGCGGAATTGGCaGACGCGCACGACTCAAAATCGTGTTCCTT......CGGGAGTGTCGGTTCGACCCCGAC.CATCGGTATCA ,_unfinished_sequence.trna17-LeuCAA Sc: 60.08  




Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>........<<<<<.<<<<<<<....
GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCGAAGGTTCGAGT.CCTTC.ATGGCTCACCA ,_unfinished_sequence.trna30-LysTTT Sc: 98.67  
.........>>>>........<<<<.>>>>>.......<<<<<..............................................
GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........G..G.....TCGAAG.NNNN..N......N... ,_unfinished_sequence.trna24-LysTTT Sc: 27.20  Pseudo



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCCTTAGCTCAGCT.GGTtAGAGCAGACGGCTCATAACCGTCCG...........GtCGTAGGTTCGAGTCCTACAGGGTCCA... ,_unfinished_sequence.trna28-MetCAT Sc: 88.27  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCAcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGCAGGTTCAAATCCTGTCCCCGCAACCA ,_unfinished_sequence.trna5-MetCAT Sc: 85.35  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGTGTAGCTCAGCT.GGCtAGAGCGTACGGTTCATACCCGTGAG...........GtCGGGGGTTCGATCCCCTCCGCCGCTA... ,_unfinished_sequence.trna2-MetCAT Sc: 75.69  
.>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCA.CGTtAGCTCA.CGGGCTCATAACCCGAAG...........GtCGCAGGTTCAAATCCTGTCCCCGCAACCA ,_unfinished_sequence.trna7-MetCAT Sc: 69.29  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTCGGTAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGT...........GtCGGCGGTTCGATTCCGTCCCGAGCCACCA ,_unfinished_sequence.trna9-PheGAA Sc: 92.86  
>>.>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<.<<....
GGCTCGGTAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGT...........GtCGGCGGTTCGATTCCGTCCCGATCCACCA ,_unfinished_sequence.trna22-PheGAA Sc: 86.60  
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTCGGTAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGT...........GtCGGCGGTTCGATTCCGTCCCGAGCCA... ,_unfinished_sequence.trna33-PheGAA Sc: 84.57  



Pro tRNAs








SeC tRNAs





Ser tRNAs





>>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>.....<<<<<..>>>>>.......<<<<<.<<<<<<<....
GGAGGTATACCCAAGTCtGGCtgA.AGGGATCGGTCTTGAAAACCGACAGGCGGCGAGA.GTCGCGCGGGGGTTCGAATCCCTC.TACCTCCTCCA ,_unfinished_sequence.trna21-SerTGA Sc: 71.57  
GGAGGTATACCCAAGTCtGGCtgA.AGGGATCGGTCTTGAAAACCGACAGGCGGCGAGA.GTCGCGCGGGGGTTCGAATCCCTC.TACCTCCTCCA ,_unfinished_sequence.trna1-SerTGA Sc: 71.57  


>>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>.....<<<<<..>>>>>.......<<<<<.<<<<<<<....
AGAGAAGTACCCAAGT..GGCtcA.AGGGGCTCCCCTGCTAAGGGAGTAGATCGCGAAC.GCGGTGCGAGGGTTCGAATCCCTT.CTTCTCTGCCA ,_unfinished_sequence.trna26-SerGCT Sc: 67.93  



Sup tRNAs






Thr tRNAs





>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGCTTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtTGGGGGTTCAAGTCCTCTAGCCGGCACCA ,_unfinished_sequence.trna23-ThrTGT Sc: 96.17  
GCCGGCTTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtTGGGGGTTCAAGTCCTCTAGCCGGCACCA ,_unfinished_sequence.trna10-ThrTGT Sc: 96.17  



Trp tRNAs





Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGGTAGCGAAGTGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCTT.......CGGGTtCGGCAGTTCGAATCTGCC.CCCCTCCACCA ,_unfinished_sequence.trna11-TyrGTA Sc: 77.59  



Val tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GATCCCGTAGCTCAGCAGGGAGAGCGCCACCTTGACAGGGTGGAG...........GtCGTGAGTTCGAGCCTCTCCGGGATCA... ,_unfinished_sequence.trna29-ValGAC Sc: 64.72

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.