tRNAscan-SE Analysis of the Azoarcus sp EbN1 Genome

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[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	13221	13295	View	Arg	CCT	0	0	66.53	32.12	34.41	Both
chr	2	119914	119989	View	Thr	TGT	0	0	90.15	62.88	27.27	Both
chr	3	139763	139839	View	Met	CAT	0	0	87.64	61.58	26.06	Both
chr	4	735160	735244	View	Leu	CAG	0	0	69.74	41.00	28.74	Both
chr	5	735370	735454	View	Leu	CAG	0	0	72.23	42.53	29.70	Both
chr	6	792356	792432	View	Met	CAT	0	0	88.03	69.40	18.63	Both
chr	7	826265	826341	View	Gln	TTG	0	0	77.07	55.60	21.47	Both
chr	8	1383723	1383796	View	Gly	CCC	0	0	65.01	39.19	25.82	Eufind
chr	9	1583229	1583304	View	Lys	TTT	0	0	90.00	79.12	10.88	Both
chr	10	1583319	1583394	View	Lys	CTT	0	0	99.01	82.55	16.46	Both
chr	11	1599533	1599600	View	Lys	CTT	0	0	33.58	25.02	8.56	Eufind
chr	12	1833251	1833327	View	Arg	CCG	0	0	84.33	56.80	27.53	Both
chr	13	1847482	1847558	View	Ile	GAT	0	0	92.16	70.04	22.12	Both
chr	14	1847570	1847645	View	Ala	TGC	0	0	95.18	77.80	17.38	Both
chr	15	2242628	2242712	View	Tyr	GTA	0	0	70.88	44.32	26.56	Both
chr	16	2242786	2242859	View	Gly	TCC	0	0	82.26	64.80	17.46	Both
chr	17	2242886	2242960	View	Thr	GGT	0	0	86.08	55.51	30.57	Both
chr	18	2244297	2244372	View	Trp	CCA	0	0	87.97	65.30	22.67	Both
chr	19	2413332	2413408	View	Ile	GAT	0	0	92.16	70.04	22.12	Both
chr	20	2413420	2413495	View	Ala	TGC	0	0	95.18	77.80	17.38	Both
chr	21	2622603	2622679	View	Ile	GAT	0	0	92.16	70.04	22.12	Both
chr	22	2622691	2622766	View	Ala	TGC	0	0	95.18	77.80	17.38	Both
chr	23	2677689	2677765	View	Pro	CGG	0	0	85.19	60.85	24.34	Both
chr	24	2803127	2803202	View	Ala	GGC	0	0	86.46	68.18	18.28	Both
chr	25	2803221	2803296	View	Glu	TTC	0	0	56.27	28.78	27.49	Both
chr	26	2803363	2803439	View	Asp	GTC	0	0	94.55	73.65	20.90	Both
chr	27	2803552	2803627	View	Ala	GGC	0	0	86.46	68.18	18.28	Both
chr	28	2803646	2803721	View	Glu	TTC	0	0	56.27	28.78	27.49	Both
chr	29	2803788	2803864	View	Asp	GTC	0	0	94.55	73.65	20.90	Both
chr	30	2866309	2866393	View	Leu	GAG	0	0	65.14	32.48	32.66	Both
chr	31	2959537	2959612	View	Val	TAC	0	0	92.87	72.66	20.21	Both
chr	32	3304938	3305013	View	Gly	GCC	0	0	88.26	64.10	24.16	Both
chr	33	3305084	3305157	View	Cys	GCA	0	0	69.09	46.02	23.07	Both
chr	34	3380747	3380816	View	Cys	GCA	0	0	21.54	14.79	6.75	Eufind
chr	35	3400810	3400885	View	Gly	GCC	0	0	88.26	64.10	24.16	Both
chr	36	3482256	3482332	View	Pro	TGG	0	0	89.92	69.16	20.76	Both
chr	37	3482360	3482436	View	Arg	TCT	0	0	87.27	62.68	24.59	Both
chr	38	3482477	3482552	View	His	GTG	0	0	83.72	64.78	18.94	Both
chr	39	4155777	4155688	View	Ser	CGA	0	0	71.26	38.54	32.72	Both
chr	40	4068953	4068879	View	Val	CAC	0	0	91.15	67.86	23.29	Both
chr	41	4068850	4068776	View	Val	CAC	0	0	91.15	67.86	23.29	Both
chr	42	4035847	4035763	View	Leu	TAG	0	0	76.14	45.16	30.98	Both
chr	43	3402745	3402661	View	Leu	TAA	0	0	72.36	44.98	27.38	Both
chr	44	3240506	3240431	View	Asn	GTT	0	0	87.97	59.12	28.85	Both
chr	45	3240391	3240316	View	Asn	GTT	0	0	87.97	59.12	28.85	Both
chr	46	2695011	2694921	View	Ser	GGA	0	0	72.00	45.47	26.53	Both
chr	47	2581896	2581821	View	Met	CAT	0	0	94.30	74.28	20.02	Both
chr	48	828913	828827	View	Leu	CAA	0	0	80.90	49.83	31.07	Both
chr	49	689528	689453	View	Phe	GAA	0	0	96.42	75.65	20.77	Both
chr	50	548823	548747	View	Ile	GAT	0	0	92.16	70.04	22.12	Both
chr	51	548735	548660	View	Ala	TGC	0	0	95.18	77.80	17.38	Both
chr	52	511820	511744	View	Val	GAC	0	0	93.06	68.31	24.75	Both
chr	53	504198	504122	View	Pro	GGG	0	0	81.03	63.39	17.64	Both
chr	54	469570	469495	View	Thr	CGT	0	0	91.51	73.56	17.95	Both
chr	55	440758	440671	View	Ser	TGA	0	0	66.83	29.39	37.44	Both
chr	56	372265	372172	View	Ser	GCT	0	0	74.87	42.36	32.51	Both
chr	57	340005	339929	View	Arg	ACG	0	0	72.96	51.15	21.81	Both
chr	58	55689	55614	View	Ala	CGC	0	0	85.36	70.58	14.78	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.