tRNAscan-SE Analysis of the Azoarcus sp EbN1 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCGGTTCGATCCCGCTTACCTCCACCA chr.trna27-AlaGGC Sc: 86.46  
GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCGGTTCGATCCCGCTTACCTCCACCA chr.trna24-AlaGGC Sc: 86.46  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGATAGCTCAGCTGGGAGAGCGCTGCGTTCGCAATGCAGAG...........GtCGAGGGTTCGATCCCCTTTCGGTCCACCA chr.trna58-AlaCGC Sc: 85.36  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGACGGTTCGATCCCGTCATCCTCCACCA chr.trna51-AlaTGC Sc: 95.18  
GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGACGGTTCGATCCCGTCATCCTCCACCA chr.trna22-AlaTGC Sc: 95.18  
GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGACGGTTCGATCCCGTCATCCTCCACCA chr.trna20-AlaTGC Sc: 95.18  
GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGACGGTTCGATCCCGTCATCCTCCACCA chr.trna14-AlaTGC Sc: 95.18  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCATCTGGAtA.GAGTACTTGGCTACGAACCAAGGG...........GtAGGGAGTTCGAATCTCTCCGGGCGCGCCA chr.trna57-ArgACG Sc: 72.96  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAGCTGGAtA.GAGTACTGCCCTCCGAAGGCAGGG...........GtCGGACGTTCGAATCGTCTCGGGCGCGCCA chr.trna12-ArgCCG Sc: 84.33  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CTCCTCGTAGTTCAAT.GGAtA.GAACGAGCGCCTCCTAAGCGCTAG...........A.TGTGAGTTCGATTCTCGCCGAGGAGACCA chr.trna1-ArgCCT Sc: 66.53  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CTGCCCGTAGCTCAATTGGAtA.GAGCACCGGCCTTCTAAGCCGGGG...........GtTACAGGTTCGATCCCTGTCGGGCAGGCCA chr.trna37-ArgTCT Sc: 87.27  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCCCGATAGCTCAGTCGGTAGAGCAACGGACTGTTAATCCGTGT...........GtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA chr.trna45-AsnGTT Sc: 87.97  
TCCCCGATAGCTCAGTCGGTAGAGCAACGGACTGTTAATCCGTGT...........GtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA chr.trna44-AsnGTT Sc: 87.97  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCACTCCGCCA chr.trna29-AspGTC Sc: 94.55  
GGAGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCACTCCGCCA chr.trna26-AspGTC Sc: 94.55  



Cys tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCGCGATGGCAGAGT.GGTT...ATGCAGCGGCCTGCAAAGCCGTGT...........ACATCGGTTCGATTCCGGTTCGCGCCTCCA chr.trna33-CysGCA Sc: 69.09  
.>>>>.>..>.................<.>>>>>.......<<<<<...............>>>>>.......<<<<<<.<<<<.....
CGCGCCAATG.....CTGGAA...ATCCCACGGCCTGCAAAGCCGTGT...........ACATCGGTTCGATTCCGGTTCGCGCCTCCA chr.trna34-CysGCA Sc: 21.54  



Gln tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGAGTCGCCAAGTTGGTcAAGGCACCGGATTTTGATTCCGGCA...........TtCGAAGGTTCGAATCCTTCTTCCCCAGCCA chr.trna7-GlnTTG Sc: 77.07  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTGGGGACGCCA chr.trna28-GluTTC Sc: 56.27  
GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTGGGGACGCCA chr.trna25-GluTTC Sc: 56.27  



Gly tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGGGAATAGCTCAGTTGGTA.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGACTCGT.TTCCCGCTCCA chr.trna35-GlyGCC Sc: 88.26  
GCGGGAATAGCTCAGTTGGTA.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGACTCGT.TTCCCGCTCCA chr.trna32-GlyGCC Sc: 88.26  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGGGCGTCGTATAAT.GGTA.ATACCCTAGCTTCCCAAGCTAGA............GcCGTGGGTTCGATTCCCAT.CGCCCGCTCCA chr.trna8-GlyCCC Sc: 65.01  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTAGCTCAAT.GGTA.GAGCAGAAGCCTTCCAAGCTTATG...........A.CGAGGGTTCGATTCCCTT.CACCCGCTCCA chr.trna16-GlyTCC Sc: 82.26  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCATTAGCTCAGTTGGTAGAGCACTGGATTGTGGCTCCAGTT...........GtCACCGGTTCGATCCCGGTATGTCGCCCCA chr.trna38-HisGTG Sc: 83.72  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTGTAGCTCAGCTGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAACCCAACCAGACCCACCA chr.trna50-IleGAT Sc: 92.16  
GGGTCTGTAGCTCAGCTGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAACCCAACCAGACCCACCA chr.trna21-IleGAT Sc: 92.16  
GGGTCTGTAGCTCAGCTGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAACCCAACCAGACCCACCA chr.trna19-IleGAT Sc: 92.16  
GGGTCTGTAGCTCAGCTGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAACCCAACCAGACCCACCA chr.trna13-IleGAT Sc: 92.16  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGACGTGGTGAAATTGGTaGACACGCCATCTTGAGGGGGTGGT.GGC..GAAA.......GCCG.TGTGAGTTCGAGTCTCAC.CGTCGGCACCA chr.trna30-LeuGAG Sc: 65.14  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.>.........<.<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCAGATGGCGGAATTGGTaGACGCACTAGTTTCAGGTACTAGC.GCCGC.........GAGGCG.TGGAGGTTCGAGTCCTCT.TCTGGGCACCA chr.trna5-LeuCAG Sc: 72.23  
GCCCAGATGGCGGAATTGGTaGACGCACTAGTTTCAGGTACTAGC.GCTGC.........GAGGCG.TGGAGGTTCGAGTCCTCT.TCTGGGCACCA chr.trna4-LeuCAG Sc: 69.74  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<....
GCGAGGGTGGCGGAATTGGTaGACGCACTGGATTTAGGTTCCAGC.GCC..GCAA.......GGCG.TGAGAGTTCGAGTCTCTT.CCCTCGCACCA chr.trna42-LeuTAG Sc: 76.14  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGGGATGGCGGAATCGGTaGACGCAGCGGATTCAAAATCCGCCGGTG..GTAA.......CACTgTGAGGGTTCGAGTCCCTC.TCCCGGCACCA chr.trna48-LeuCAA Sc: 80.90  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTGGTGAAATCGGTaTACACAGCGGATTTAAAATCCGCCGCCTT...........CGGGCtTACGGGTTCAAGTCCCGT.CCCCGGCACCA chr.trna43-LeuTAA Sc: 72.36  



Lys tRNAs


>>>>>>>..>>>>............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGTATAGCTCAGTTGGTA....GAGCAGCTGACTCTTAATCAGTAG...........GtCGTAGGTTCGAATCCTACTGCCCCCACCA chr.trna10-LysCTT Sc: 99.01  
>>.>>.>..>>>..............<<<...>>>.......<<<..................>>>>>.......<<<<<<.<<.<<....
GGCGGAATTGAT.....GGAA.....ATTG..TGACTCTTAATCAGTAG...........GtCGTAGGTTCGAATCCTACTGCCCCCACCA chr.trna11-LysCTT Sc: 33.58  

>>>>>>>..>>>>............<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<....
GGGTCGTTAGCTCAGCTGGTA....GAGCAGCGGACTTTTAATCCGTTG...........GtCGCAGGTTCGAATCCCGCACGGCCTACCA chr.trna9-LysTTT Sc: 90.00  



Met tRNAs


>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCATAGCTCAAT..GGTtA.GAGCAGAGGACTCATAATCCTTTG...........GtTGCAGGTTCGAGTCCTGCTGGGCCCACCA chr.trna47-MetCAT Sc: 94.30  
>>>>>>>..>>>>...........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GGTGATGTAGCTCAGAC.GGTtA.GAGCGATGGATTCATAACCCATAG...........GtCGGCGGTTCGATTCCGCCCATCACCACCA chr.trna6-MetCAT Sc: 88.03  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGTCtGGC.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGCAGGTTCAAATCCTGCCCCCGCAACCA chr.trna3-MetCAT Sc: 87.64  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCAGGTAGCTCAGTTGGTAGAGCAGCGGATTGAAAATCCGCGT...........GtCGGCGGTTCGATTCCGTCCCTGGCCACCA chr.trna49-PheGAA Sc: 96.42  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
CGGGGCGTAGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGG...........GtCGCGAGTTCGAATCCCGCCGCCCCGACCA chr.trna53-ProGGG Sc: 81.03  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGAATAGCTCAGCCtGGTAGAGCACTGCGTTCGGGACGCAGGG...........GcCGGAGGTTCGAATCCTCTTTCCCCGACCA chr.trna23-ProCGG Sc: 85.19  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTGTAGCGCAGTCcGGTAGCGCGCTTGCTTTGGGAGCAAGAT...........GtCGGGGGTTCGAATCCCTCCACCCCGACCA chr.trna36-ProTGG Sc: 89.92  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGATGAGTGGTttA.AGTCGCACGCCTGGAAAGCGTGT.TTGGGA.TAATa.TCCCAA.CGCGGGTTCGAATCCCGC..CCTCTCCGCCA chr.trna46-SerGGA Sc: 72.00  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGTGGTcgA.ATGTACCTGACTCGAAATCAGGC.GTAGGT.GCGA..GCCTAC.CGTGGGTTCGAATCCCAC..CCTCTCCGCCA chr.trna39-SerCGA Sc: 71.26  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>>...........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAAGCGTGGCAGAGTGGTcgA.TTGCACCGGTCTTGAAAACCGGCAACGG...GCAA....CCGTTCGTGAGTTCGAATCTCAC..CGCTTCCGCCA chr.trna55-SerTGA Sc: 66.83  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGTTGGCCGAGAGGTcgA.AGGCACTCCCCTGCTAAGGGAGCATGCGGGCTAAA.ACTCGCATCGAGGGTTCGAATCCCTC..ACTCTCCGCCA chr.trna56-SerGCT Sc: 74.87  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCATGTAGCTCAGT.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCACGTGTTCAATCCACGTCATGGGCACCA chr.trna17-ThrGGT Sc: 86.08  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
GCTGCTGTAGCTCAGTCGGTA.GAGCAACTGATTCGTAATCAGTAG...........GtCACCAGTTCGATTCCGGTCAGCAGCACCA chr.trna54-ThrCGT Sc: 91.51  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGCATAGCTCAGTTGGTA.GAGCAACCGCCTTGTAAGCGGTAG...........GtCATCTGTTCGAGTCAGATTGTCGGCACCA chr.trna2-ThrTGT Sc: 90.15  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGCATAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACCGAAG...........GtTGGGGGTTCGATTCCCTCTGCCCCTGCCA chr.trna18-TrpCCA Sc: 87.97  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>........<<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGGTTCCCGAGCGGTcaA.AGGGATCAGACTGTAAATCTGACGGCA.......cTGCCTtCGAAGGTTCGAATCCTTC.CCCCTCCACCA chr.trna15-TyrGTA Sc: 70.88  



Val tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCGCGTAGCTCAGCTGGTtA.GAGCACCACCTTGACATGGTGGGG...........GtCGTTGGTTCGAGTCCAATCGCGCCTACCA chr.trna52-ValGAC Sc: 93.06  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGGTTAGCTCAGC.GGT.A.GAGCACTGCCTTCACACGGCAGGG...........GtCACTGGTTCGATCCCAGTACCGCCCACCA chr.trna41-ValCAC Sc: 91.15  
GGGCGGTTAGCTCAGC.GGT.A.GAGCACTGCCTTCACACGGCAGGG...........GtCACTGGTTCGATCCCAGTACCGCCCACCA chr.trna40-ValCAC Sc: 91.15  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGCTTAGCTCAGTTGGT.A.GAGCGCCGCCCTTACAAGGCGGAT...........GtCGGCGGTTCGAGCCCGTCAGCACCTACCA chr.trna31-ValTAC Sc: 92.87

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.