GtRNAdb

tRNAscan-SE Analysis of Arabidopsis thaliana (Feb 2004)

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>> Genome Seq
tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr4 25 13454563 13454635 Ala AGC gcatcacaat tattttatgt0 0 64.02 39.6824.34 Both
chr4 71 6905552 6905480 Ala AGC aagagcaaat tttttttgtt0 0 64.02 39.6824.34 Both
chr5 88 17476475 17476403 Ala AGC ttcaattcat cttttattgt0 0 64.02 39.6824.34 Both
chr2 71 13144385 13144313 Ala AGC tagtcatcgt cttagttact0 0 65.56 41.2224.34 Both
chr1 11 2025355 2025427 Ala AGC tttcgtcatc ttttcctatt0 0 68.12 43.7824.34 Both
chr1 13 2334819 2334891 Ala AGC aatgcaagta tcttagcatt0 0 68.12 43.7824.34 Both
chr2 2 706795 706867 Ala AGC tgttcgacat ctttctttta0 0 68.12 43.7824.34 Both
chr2 99 846926 846854 Ala AGC tgatatgaat tttctttttt0 0 68.12 43.7824.34 Both
chr3 29 10753668 10753740 Ala AGC aatatcaaaa cttttctttt0 0 68.12 43.7824.34 Both
chr3 75 10760702 10760630 Ala AGC atcaacgaat cttttttatt0 0 68.12 43.7824.34 Both
chr4 70 7232865 7232793 Ala AGC ttatcaaact catttcattc0 0 68.12 43.7824.34 Both
chr5 111 2432336 2432264 Ala AGC gatatcaaaa tttttcctcc0 0 68.12 43.7824.34 Both
chr5 123 150426 150354 Ala AGC gaacaacgat tttttttcct0 0 68.12 43.7824.34 Both
chr5 30 15993515 15993587 Ala AGC gttgtcaaaa tttatttttc0 0 68.12 43.7824.34 Both
chr5 56 24726892 24726964 Ala AGC aaacagcaat tctttttatt0 0 68.12 43.7824.34 Both
chr5 74 22502068 22501996 Ala AGC gtacacatat ttatttttat0 0 68.12 43.7824.34 Both
chr2 27 9598107 9598179 Ala CGC gttaccaatt ttttgatctc0 0 61.16 39.4521.71 Both
chr3 57 22871102 22871174 Ala CGC tagccaatat attttgttga0 0 64.52 40.1824.34 Both
chr1 164 23936800 23936872 Ala CGC ttcaatcttt ttccatttaa0 0 65.14 41.2623.88 Both
chr4 23 12429609 12429681 Ala CGC cttcaaaatt attttgtttt0 0 65.14 41.2623.88 Both
chr4 51 13885269 13885197 Ala CGC aaatcaaaca ttttttcata0 0 65.14 41.2623.88 Both
chr5 110 2587899 2587827 Ala CGC tcaacaaaaa ttttttaaaa0 0 65.14 41.2623.88 Both
chr5 53 24547402 24547474 Ala CGC tactcaaaat cctactctaa0 0 65.14 41.2623.88 Both
chr3 59 23047855 23047927 Ala TGC agaatcattc tttttatttt0 0 63.65 38.9024.75 Both
chr1 207 20416667 20416595 Ala TGC ctcaacaact agtttttgga0 0 66.31 41.9824.33 Both
chr1 22 4741996 4742068 Ala TGC ttcagcaaat attttgaaac0 0 66.31 41.9824.33 Both
chr1 23 4743092 4743164 Ala TGC acaagcaata attgttatcc0 0 66.31 41.9824.33 Both
chr1 237 2846611 2846539 Ala TGC ttaacaaaat atctaatttt0 0 66.31 41.9824.33 Both
chr1 33 9158170 9158242 Ala TGC aaacatcaac ttttcccact0 0 66.31 41.9824.33 Both
chr2 59 19351497 19351569 Ala TGC taaacatatt actcattttt0 0 66.31 41.9824.33 Both
chr2 98 1054787 1054715 Ala TGC ataatcaatt tttttatgta0 0 66.31 41.9824.33 Both
chr3 61 23296801 23296729 Ala TGC cataacaaat atttgctttt0 0 66.31 41.9824.33 Both
chr3 62 23296640 23296568 Ala TGC aatttcaaga ccacttttgt0 0 66.31 41.9824.33 Both
 
chr2 80 9472733 9472661 Arg ACG agacagagat cctacttact0 0 70.96 49.3721.59 Both
chr1 20 4440212 4440284 Arg ACG agaacaaaac cattcttttt0 0 73.60 50.9522.65 Both
chr2 55 17880767 17880839 Arg ACG tagtaataat tctttttcat0 0 73.60 50.9522.65 Both
chr2 28 10380656 10380728 Arg ACG ttgcaagaaa atttcttttt0 0 74.20 52.2022.00 Both
chr5 107 3212424 3212352 Arg ACG tcatcacaag ttgttctttt0 0 74.20 52.2022.00 Both
chr3 79 7224296 7224224 Arg ACG taacagatca ttctacatcg0 0 74.25 53.0621.19 Both
chr4 31 15183090 15183162 Arg ACG aaacacaaaa gatttttatg0 0 75.05 53.4721.58 Both
chr4 44 18501778 18501706 Arg ACG agtcaaataa tttctctttt0 0 75.05 53.4721.58 Both
chr5 61 25989904 25989976 Arg ACG aagcaagtaa ctcttcatct0 0 75.45 54.2321.22 Both
chr1 181 29809016 29809088 Arg CCG tattaaaaac ttaatttttt0 0 72.20 56.1816.02 Both
chr1 227 5619537 5619465 Arg CCG ctatcaaaag ttttttattt0 0 72.20 56.1816.02 Both
chr3 7 1220235 1220307 Arg CCG aataatgaac tagttttttg0 0 72.92 57.1515.77 Both
chr3 82 3995176 3995104 Arg CCG tctccaatgt tcccattttt0 0 85.01 62.5322.48 Both
chr5 94 13823284 13823212 Arg CCT taagaagaaa tttaccttgt0 0 57.69 47.4210.27 Eufind
chr4 48 16454773 16454701 Arg CCT agcgtaaaga tatgtaatgt0 0 71.26 50.8320.43 Both
chr5 12 3324703 3324775 Arg CCT tcccaaagaa tttattttgt0 0 75.77 56.1519.62 Both
chr1 74 18391470 18391542 Arg CCT gttcaaaaaa tttctttgtt0 0 76.26 56.9919.27 Both
chr3 14 3535152 3535224 Arg CCT acaatcaaaa atttatctct0 0 76.26 56.9919.27 Both
chr3 23 6663714 6663786 Arg CCT gaataagaaa tttttatttt0 0 76.26 56.9919.27 Both
chr5 6 1742693 1742765 Arg CCT aaatgcagaa ttaattttag0 0 76.26 56.9919.27 Both
chr5 62 26212685 26212757 Arg CCT gatcaaatag cttcatttta0 0 76.26 56.9919.27 Both
chr1 200 22481511 22481438 Arg TCG gctatgtatt tttttttttt0 0 81.86 60.3321.53 Both
chr1 210 19502161 19502088 Arg TCG taacaaataa tttttcacct0 0 81.86 60.3321.53 Both
chr1 235 3678848 3678775 Arg TCG catactaaat tatttttgtt0 0 81.86 60.3321.53 Both
chr1 186 30088962 30088889 Arg TCG taacaagaat actttttttc0 0 82.11 60.8321.28 Both
chr3 86 2918492 2918419 Arg TCG ggaattgaaa ttttcctttt0 0 82.11 60.8321.28 Both
chr5 119 588964 588891 Arg TCG tattcgtctt tttaagactt0 0 82.11 60.8321.28 Both
chr5 5 998941 999013 Arg TCT acccaacaaa ttattttcct0 0 66.87 52.6114.26 Both
chr2 56 18576986 18577058 Arg TCT aattacacaa ctattctaat0 0 70.42 54.9015.52 Both
chr4 35 16304129 16304201 Arg TCT caacaaaaag tctcttccaa0 0 71.62 52.1719.45 Both
chr4 30 15120656 15120728 Arg TCT taaacaaaaa tatttaataa0 0 73.37 54.3419.03 Both
chr4 32 15576656 15576728 Arg TCT gtagcaacaa ctcttttttt0 0 73.37 54.3419.03 Both
chr3 13 3096221 3096293 Arg TCT tgcaagcaga tcattttttt0 0 73.39 54.3719.02 Both
chr1 64 13687638 13687710 Arg TCT aagaacaaaa agttgaattt0 0 73.62 54.7918.83 Both
chr2 51 15353239 15353311 Arg TCT tagtacaaaa ccaattctat0 0 73.62 54.7918.83 Both
chr2 29 10820918 10820990 Arg TCT ataacaacaa atttgtattt0 0 75.03 55.9919.04 Both
 
chr2 34 13658351 13658425 Asn GTT aaaatatcca aattttgatt0 0 72.51 50.3622.15 Both
chr1 230 5189755 5189682 Asn GTT taaacaaaaa attccttttc0 0 73.38 47.2726.11 Both
chr2 18 3496437 3496508 Asn GTT ctcccattgt atttgttagt0 0 77.17 56.7620.41 Both
chr4 69 7341494 7341421 Asn GTT ttatcaaaaa tttcttttcc0 0 78.40 53.0325.37 Both
chr1 77 19428224 19428297 Asn GTT aaaacaacaa tttttataaa0 0 80.57 53.1927.38 Both
chr2 86 7962832 7962759 Asn GTT ttatcaataa atgttttctt0 0 80.57 53.1927.38 Both
chr4 20 11910300 11910373 Asn GTT ttaacaatta atttgttatt0 0 80.57 53.1927.38 Both
chr5 67 26573322 26573249 Asn GTT gaacaaataa ttatgcacta0 0 80.57 53.1927.38 Both
chr1 170 26053141 26053214 Asn GTT taccaaagaa tttttttgcc0 0 82.29 56.1926.10 Both
chr2 1 102064 102137 Asn GTT taatcaaaat attacttttt0 0 82.29 56.1926.10 Both
chr2 48 15175941 15176014 Asn GTT gcatgcaata atcttttctt0 0 82.29 56.1926.10 Both
chr3 42 18928414 18928487 Asn GTT agtacaatta ttttttatcc0 0 82.29 56.1926.10 Both
chr5 68 26238933 26238860 Asn GTT gttaacaaaa ttttttaact0 0 82.29 56.1926.10 Both
chr5 93 15049811 15049738 Asn GTT ttaacaaaaa attgttttat0 0 82.29 56.1926.10 Both
chr1 242 1583844 1583771 Asn GTT ataacaagta ttttttattt0 0 82.78 56.6726.11 Both
chr1 32 9143797 9143870 Asn GTT attaacaaaa atttagattt0 0 84.99 58.8926.10 Both
 
chr2 94 3255902 3255829 Asp GTC ttttaaaact acctagtcat0 0 60.73 43.2717.46 Both
chr5 27 11802285 11802356 Asp GTC caaattgata ccaaattgat0 0 61.39 48.1913.20 Both
chr1 213 16588216 16588145 Asp GTC tgattcagaa ccaaattgat0 0 63.92 48.7315.19 Both
chr2 35 14250207 14250278 Asp GTC tagcaacaag tcttttttat0 0 64.11 51.4312.68 Both
chr1 174 27792644 27792715 Asp GTC gagcaacaaa tatttttaat0 0 69.46 51.1118.35 Both
chr1 176 28188193 28188264 Asp GTC tagcaacaaa attactttag0 0 69.46 51.1118.35 Both
chr1 179 28531428 28531499 Asp GTC gaacatcaaa ctaacatttt0 0 69.46 51.1118.35 Both
chr1 212 18139337 18139266 Asp GTC gaacatcaaa tttttttccc0 0 69.46 51.1118.35 Both
chr1 26 6075813 6075884 Asp GTC tagcaactca aatttttttg0 0 69.46 51.1118.35 Both
chr1 27 6345757 6345828 Asp GTC tatcaacaag attttttttt0 0 69.46 51.1118.35 Both
chr1 5 877649 877720 Asp GTC aaacaacaaa atctttttta0 0 69.46 51.1118.35 Both
chr2 36 14251775 14251846 Asp GTC tagcaacaaa tattttgttt0 0 69.46 51.1118.35 Both
chr2 64 16646929 16646858 Asp GTC gagcaacaaa tttttttatt0 0 69.46 51.1118.35 Both
chr3 18 4330779 4330850 Asp GTC aatcaacaaa tttattttta0 0 69.46 51.1118.35 Both
chr3 26 10211565 10211636 Asp GTC gaacatcaaa tagtttttaa0 0 69.46 51.1118.35 Both
chr3 3 476809 476880 Asp GTC gatcaacaag taattttttc0 0 69.46 51.1118.35 Both
chr3 44 19566014 19566085 Asp GTC gaacaacaaa attttttatt0 0 69.46 51.1118.35 Both
chr3 66 22149895 22149824 Asp GTC aatcaacaga ctttttttat0 0 69.46 51.1118.35 Both
chr3 70 19044443 19044372 Asp GTC taacaacgag tcttttttgt0 0 69.46 51.1118.35 Both
chr5 16 4673903 4673974 Asp GTC aaacaaaaat attatccttt0 0 69.46 51.1118.35 Both
chr5 19 5161515 5161586 Asp GTC gagcaaataa ttactttttt0 0 69.46 51.1118.35 Both
chr5 49 23861432 23861503 Asp GTC aatcaaaaat tctatttttt0 0 69.46 51.1118.35 Both
chr5 7 1788652 1788723 Asp GTC actacaaaat attttttttt0 0 69.46 51.1118.35 Both
chr5 91 16256937 16256866 Asp GTC tagcaacaaa attttttgct0 0 69.46 51.1118.35 Both
chr5 97 7222131 7222060 Asp GTC tatcaacaag attttttatc0 0 69.46 51.1118.35 Both
chr1 29 7004505 7004576 Asp GTC agcaacaaat attaactttt0 0 71.35 53.0018.35 Both
 

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr2 17 3495439 3495509 Cys GCA tggcgggttt acaccttcat0 0 42.92 28.4714.45 Both
chr5 99 7074429 7074358 Cys GCA aaatcaataa atattttttc0 0 59.44 41.7517.69 Both
chr5 98 7074845 7074774 Cys GCA aaagcaataa atattttttc0 0 64.57 49.9214.65 Eufind
chr4 65 9978189 9978118 Cys GCA atatcaaatt tccttttttt0 0 71.20 47.3823.82 Both
chr5 100 7074016 7073945 Cys GCA aaatcaataa atatgttttc0 0 71.20 47.3823.82 Both
chr5 90 16524832 16524761 Cys GCA tttatcagtt tttttatcaa0 0 73.07 57.4015.67 Both
chr5 101 7073603 7073532 Cys GCA aaatcaataa atatgtttta0 0 76.48 54.3722.11 Both
chr1 198 23562921 23562850 Cys GCA gagcatccaa ttttccattt0 0 76.97 58.0718.90 Both
chr2 53 16525847 16525918 Cys GCA aagtcaagaa ttattttttg0 0 77.51 52.5724.94 Both
chr2 65 16525713 16525642 Cys GCA aagtcaataa taattttttt0 0 77.51 52.5724.94 Both
chr3 19 4998148 4998219 Cys GCA ttgaacaaaa tcattttttt0 0 77.60 57.4520.15 Both
chr3 68 19420417 19420346 Cys GCA gtacaacaaa catttttttt0 0 78.18 58.7619.42 Both
chr5 36 18924750 18924821 Cys GCA ataacaaatt gatatttttc0 0 79.11 55.2923.82 Both
chr1 208 19929578 19929507 Cys GCA aacattaaaa tgatttttta0 0 79.91 55.3624.55 Both
chr2 30 12336080 12336151 Cys GCA taatcaataa ttcttttttg0 0 79.91 55.3624.55 Both
 
chr2 21 7046176 7046247 Gln CTG taaacataat ttatttttac0 0 69.59 48.8720.72 Both
chr2 82 9277814 9277743 Gln CTG cgtatcaatt atatttttgc0 0 69.59 48.8720.72 Both
chr4 52 13882994 13882923 Gln CTG gtcatcaaat tctttttgtc0 0 69.59 48.8720.72 Both
chr4 79 424788 424717 Gln CTG atagcaaaaa ctttttttca0 0 69.59 48.8720.72 Both
chr3 58 22892782 22892853 Gln CTG ggtgcaaatt ttaaattaga0 0 69.79 49.8519.94 Both
chr1 6 892514 892585 Gln CTG gtaacgaaat ttttttttgt0 0 70.28 50.6919.59 Both
chr5 24 7387891 7387962 Gln CTG tgaatagaat attctccttt0 0 70.28 50.6919.59 Both
chr4 5 1501606 1501677 Gln CTG cgaagcaact ttgttttcgg0 0 70.67 50.3120.36 Both
chr1 245 111961 111890 Gln CTG aacatcaagc atttttattt0 0 72.52 49.2323.29 Both
chr2 5 3276437 3276508 Gln TTG agaggccgta attatgaaca0 0 54.44 21.9932.45 Both
chr5 25 7981401 7981472 Gln TTG ttaagcatct catttttttc0 0 73.55 53.9019.65 Both
chr1 188 29148055 29147984 Gln TTG aagcatccga ctttttgttt0 0 74.09 57.5016.59 Both
chr1 190 28952519 28952448 Gln TTG agtacaacaa ttattttttt0 0 74.09 57.5016.59 Both
chr1 221 7656180 7656109 Gln TTG aagcacctga ctcatgctct0 0 74.09 57.5016.59 Both
chr1 222 7499793 7499722 Gln TTG tgaacaaaaa ttctttttaa0 0 74.09 57.5016.59 Both
chr3 38 18080063 18080134 Gln TTG tgaaccactc ttttttgctg0 0 74.09 57.5016.59 Both
chr5 40 20692448 20692519 Gln TTG gtacaagaaa ttatttttgc0 0 74.09 57.5016.59 Both
 
chr4 19 10302012 10302084 Glu CTC agggcaacaa ttttttttat0 0 70.56 52.8017.76 Both
chr1 177 28411645 28411717 Glu CTC cgaacacaaa tttcttttta0 0 76.51 52.9723.54 Both
chr1 192 28377222 28377150 Glu CTC gactcacaaa ttactttttt0 0 76.51 52.9723.54 Both
chr1 218 10207364 10207292 Glu CTC gtgtcaacta tttttttatt0 0 76.51 52.9723.54 Both
chr1 61 10756704 10756776 Glu CTC tagacaagaa tttttttctc0 0 76.51 52.9723.54 Both
chr2 58 18963714 18963786 Glu CTC atcaacaaga atagttttaa0 0 76.51 52.9723.54 Both
chr3 55 22786897 22786969 Glu CTC tttagcaaaa tctttttttg0 0 76.51 52.9723.54 Both
chr4 36 16556628 16556700 Glu CTC gtatcaacag tttgttttta0 0 76.51 52.9723.54 Both
chr4 38 17130055 17130127 Glu CTC ctatcacaaa atttttttat0 0 76.51 52.9723.54 Both
chr5 108 3030890 3030818 Glu CTC ttattacaaa atttattttt0 0 76.51 52.9723.54 Both
chr2 52 15923895 15923967 Glu CTC ataacacaaa tttttttaat0 0 78.60 55.0623.54 Both
chr3 71 19008694 19008622 Glu CTC taggcaacat cttttttttg0 0 79.86 57.0922.77 Both
chr4 12 7814198 7814270 Glu CTC gaagcaacaa tttttttttt0 0 79.86 57.0922.77 Both
chr4 77 611932 611866 Glu TTC cagaaggtaa gagcttttct0 0 24.19 10.1614.03 Eufind
chr2 93 3303312 3303241 Glu TTC tggccttttg ggtactcatt0 0 65.98 40.4925.49 Both
chr1 191 28523717 28523646 Glu TTC acaacatcaa ctttttgttc0 0 71.73 49.4122.32 Both
chr3 72 18755860 18755789 Glu TTC taacaaaaca ctttttttgg0 0 71.73 49.4122.32 Both
chr1 17 2939419 2939490 Glu TTC caacaacaaa cgtttttggt0 0 72.05 50.1121.94 Both
chr1 224 6995344 6995273 Glu TTC aataacaaaa cttttttatt0 0 72.05 50.1121.94 Both
chr4 46 17500872 17500801 Glu TTC gaacaacaaa cttttttgtt0 0 72.05 50.1121.94 Both
chr5 66 26670567 26670496 Glu TTC catcaacaaa ctttttgctt0 0 72.05 50.1121.94 Both
chr5 84 18560278 18560207 Glu TTC gaacatcaaa cttttttaat0 0 72.05 50.1121.94 Both
chr5 95 9815477 9815406 Glu TTC agccaactaa ctttttgttt0 0 72.05 50.1121.94 Both
chr3 93 1601415 1601344 Glu TTC caataacata ctctttttgg0 0 72.13 50.1821.95 Both
chr3 40 18837021 18837092 Glu TTC attaacaaat cctttttttt0 0 72.20 50.3021.90 Both
 
chr1 215 12097327 12097259 Gly ACC acaacaagta gttgagctgt0 0 20.99 14.796.20 Eufind
chr2 60 19566995 19566925 Gly CCC ataataaaaa ttttttcatt0 0 68.50 35.5033.00 Both
chr3 60 23221683 23221753 Gly CCC gcatgcggaa aatttttatt0 0 68.50 35.5033.00 Both
chr4 59 12486282 12486212 Gly CCC gtcagaaata gataaaggtt0 0 68.50 35.5033.00 Both
chr4 6 6646426 6646496 Gly CCC taaacaaaaa aaacttttgt0 0 68.50 35.5033.00 Both
chr5 78 21740410 21740340 Gly CCC atgaataaaa actgttttaa0 0 68.50 35.5033.00 Both
chr1 7 1159022 1159092 Gly GCC tttaaataaa gattgtattt0 0 57.43 45.8411.59 Eufind
chr2 88 3444431 3444360 Gly GCC accgtagctg cctggtgttc0 0 62.60 39.5623.04 Both
chr3 91 1843400 1843330 Gly GCC gaatcaataa acaatttgtt0 0 65.04 50.0514.99 Both
chr5 122 389960 389890 Gly GCC gtaaacaata tattctttta0 0 66.11 39.8526.26 Both
chr1 201 22401327 22401257 Gly GCC taaacaagta atagagctgt0 0 67.59 49.6817.91 Both
chr1 161 22431832 22431902 Gly GCC taggcaagta tttgagcgtt0 0 69.82 49.7520.07 Both
chr2 54 17667856 17667926 Gly GCC ggacatcgaa atttttttaa0 0 69.82 49.7520.07 Both
chr1 171 26977051 26977121 Gly GCC aatagaagaa atttatcttt0 0 70.74 44.4826.26 Both
chr5 87 17512839 17512769 Gly GCC tccgcaaaaa ctttttgtta0 0 70.74 44.4826.26 Both
chr1 202 22398372 22398302 Gly GCC ttgtcaaata ttgagcggtg0 0 71.56 51.4920.07 Both
chr1 203 22317149 22317079 Gly GCC taggcaagta ttgagctgtg0 0 71.56 51.4920.07 Both
chr1 240 2111217 2111147 Gly GCC gttcaacaaa tgagctgtga0 0 71.56 51.4920.07 Both
chr1 241 2107467 2107397 Gly GCC tgtcatcaaa tgagctgtga0 0 71.56 51.4920.07 Both
chr2 32 12888668 12888738 Gly GCC gaatcaataa ctaagctatg0 0 71.56 51.4920.07 Both
chr2 33 12889811 12889881 Gly GCC gaaacaacaa tctagtagca0 0 71.56 51.4920.07 Both
chr2 72 12983095 12983025 Gly GCC aatcaaaaaa ttgagctatg0 0 71.56 51.4920.07 Both
chr3 47 19995919 19995989 Gly GCC taacaaaaaa atttgttttg0 0 71.56 51.4920.07 Both
chr3 51 21553259 21553329 Gly GCC ttttcaacaa aaaagtatca0 0 71.56 51.4920.07 Both
chr3 56 22853497 22853567 Gly GCC ttaatcaaaa ttgttatttt0 0 71.56 51.4920.07 Both
chr4 33 15671399 15671469 Gly GCC ttcacaagaa aatttttagt0 0 71.56 51.4920.07 Both
chr5 113 2212749 2212679 Gly GCC ggacatacaa tagttttgct0 0 71.56 51.4920.07 Both
chr5 23 6401241 6401311 Gly GCC tagcatgaaa tttatttttt0 0 71.56 51.4920.07 Both
chr5 65 26700004 26699934 Gly GCC ttgtcaagaa tctcttttga0 0 71.56 51.4920.07 Both
chr1 14 2588522 2588593 Gly TCC atatgcaaaa tttatatttt0 0 75.78 52.0523.73 Both
chr1 232 4285956 4285885 Gly TCC cactcgttca atgctttttc0 0 75.78 52.0523.73 Both
chr2 74 12478921 12478850 Gly TCC gaacatctaa ttttttttgt0 0 75.78 52.0523.73 Both
chr2 75 11871302 11871231 Gly TCC atcacaagta ttatcattat0 0 75.78 52.0523.73 Both
chr3 35 17160737 17160808 Gly TCC atgaaccaaa tttttaaatt0 0 75.78 52.0523.73 Both
chr3 74 16438097 16438026 Gly TCC cttccaaaaa atttctacta0 0 75.78 52.0523.73 Both
chr4 63 10326047 10325976 Gly TCC cttaacaata tttcctcatt0 0 75.78 52.0523.73 Both
chr5 105 3578367 3578296 Gly TCC ttttcaataa attcgttttc0 0 75.78 52.0523.73 Both
chr5 13 3617059 3617130 Gly TCC gaagacaaaa attttttttt0 0 75.78 52.0523.73 Both
chr5 34 18576072 18576143 Gly TCC ttaatcgtca ttctttttta0 0 75.78 52.0523.73 Both
chr5 50 23971168 23971239 Gly TCC aagacaagaa attatatttt0 0 75.78 52.0523.73 Both
chr5 51 23974656 23974727 Gly TCC ttaacaaaaa atatttattt0 0 75.78 52.0523.73 Both
 
chr4 2 901176 901247 His GTG taacacaaaa ctttttgtta0 0 57.37 32.0825.29 Both
chr1 239 2406902 2406831 His GTG agtcattcaa cttgttttgg0 0 62.38 35.4326.95 Both
chr1 3 552640 552711 His GTG catcaacaaa cactttaagt0 0 62.38 35.4326.95 Both
chr3 89 2105033 2104962 His GTG gccaacaaaa aatattcatc0 0 62.38 35.4326.95 Both
chr4 40 18293774 18293845 His GTG agcaacaaaa ttctcttttg0 0 62.38 35.4326.95 Both
chr5 120 559399 559328 His GTG gtacaacaaa ctttcttttt0 0 62.38 35.4326.95 Both
chr5 39 20064049 20064120 His GTG aaccaacaaa ttttttttct0 0 62.38 35.4326.95 Both
chr2 31 12346828 12346899 His GTG aaacataaaa cttttttttt0 0 62.41 35.4626.95 Both
chr4 13 8255696 8255767 His GTG acaaacaaaa cttagtcttt0 0 62.41 35.4626.95 Both
chr5 71 25892691 25892620 His GTG taccatcaaa ctttttaccc0 0 67.27 40.3326.94 Both
 

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr2 7 3290963 3291034 Ile AAT cgctctcttt cttggaacgt0 0 42.87 27.7615.11 Eufind
chr2 95 3239725 3239654 Ile AAT cgctctcttt cttggaacgt0 0 42.87 27.7615.11 Eufind
chr1 169 25993393 25993466 Ile AAT tttcatcaaa tttttgtttt0 0 83.92 56.7927.13 Both
chr1 62 11104094 11104167 Ile AAT taacaaatat cttttttatt0 0 83.92 56.7927.13 Both
chr2 26 9509360 9509433 Ile AAT aaagcaagat tttcgttttt0 0 83.92 56.7927.13 Both
chr2 81 9456962 9456889 Ile AAT tataacaagt tttctttttt0 0 83.92 56.7927.13 Both
chr3 76 9373684 9373611 Ile AAT caatcagatt tttttatatt0 0 83.92 56.7927.13 Both
chr4 53 13341575 13341502 Ile AAT taaccgcagt cttttttggc0 0 83.92 56.7927.13 Both
chr4 54 13336419 13336346 Ile AAT gaaacgtagt cattttttgg0 0 83.92 56.7927.13 Both
chr5 18 5157642 5157715 Ile AAT tatcagatat cttttttgtt0 0 83.92 56.7927.13 Both
chr1 10 1978083 1978156 Ile AAT ataacacgaa tatgtcttct0 0 86.52 62.1024.42 Both
chr1 166 25890199 25890272 Ile AAT attgcaaaat tttactttct0 0 86.52 62.1024.42 Both
chr1 231 4522779 4522706 Ile AAT tcaacaaaat atatgtcttt0 0 86.52 62.1024.42 Both
chr2 22 7749794 7749867 Ile AAT ttgaacaaat ttttagctaa0 0 86.52 62.1024.42 Both
chr3 2 469667 469740 Ile AAT attcgcaaat tgttttaaca0 0 86.52 62.1024.42 Both
chr4 43 18542165 18542238 Ile AAT cttccaaaat tttttcataa0 0 86.52 62.1024.42 Both
chr5 29 15593087 15593160 Ile AAT tgtagcaaat tttggtttta0 0 86.52 62.1024.42 Both
chr5 45 22845357 22845430 Ile AAT taataaaata tcaatttttt0 0 86.52 62.1024.42 Both
chr5 63 26585623 26585696 Ile AAT tagcatccaa cctttaatgt0 0 86.52 62.1024.42 Both
chr3 8 1738797 1738870 Ile TAT atatcaaaca tttttgtttt0 0 81.06 70.0910.97 Both
chr1 12 2177884 2177957 Ile TAT tgttgccaat tattttcagt0 0 85.40 69.8215.58 Both
chr1 78 19851641 19851714 Ile TAT gttatcgtca aaacttgagt0 0 85.40 69.8215.58 Both
chr3 81 5068374 5068301 Ile TAT tattcaaaca atggttgaaa0 0 85.40 69.8215.58 Both
chr4 47 17276779 17276706 Ile TAT gagaacaaaa tttgtcctta0 0 85.40 69.8215.58 Both
 
chr1 66 17159800 17159871 Leu AAG atataaaaca gttgacttct0 0 55.79 36.6119.18 Both
chr5 52 24279806 24279886 Leu AAG ttaacaaaaa ttctctcttt0 0 66.01 38.3327.68 Both
chr1 193 28024124 28024044 Leu AAG gaacacaaaa tttccttttt0 0 68.09 40.4127.68 Both
chr2 77 11122837 11122757 Leu AAG ttaccaaaat taattattat0 0 68.09 40.4127.68 Both
chr2 83 9273969 9273889 Leu AAG tagcaacaaa ttctcttttt0 0 68.09 40.4127.68 Both
chr3 17 4254535 4254615 Leu AAG agacaacaaa atttactttt0 0 68.09 40.4127.68 Both
chr3 54 22622385 22622465 Leu AAG agcaacaaaa atttactttt0 0 68.09 40.4127.68 Both
chr4 11 7730957 7731037 Leu AAG agtacaaaat ttactctttt0 0 68.09 40.4127.68 Both
chr5 11 3118378 3118458 Leu AAG agaacaacaa ttacagtttt0 0 68.09 40.4127.68 Both
chr5 116 970878 970798 Leu AAG ctatcaaaaa ttaatttttt0 0 68.09 40.4127.68 Both
chr5 31 16427813 16427893 Leu AAG tatacaacaa ttcacttttt0 0 68.09 40.4127.68 Both
chr5 60 25942292 25942372 Leu AAG gaacatagac aatcctaatt0 0 68.09 40.4127.68 Both
chr5 109 2898951 2898868 Leu CAA atatcaataa tttttttttt0 0 69.94 43.6726.27 Both
chr5 9 2411149 2411232 Leu CAA atatcaacga ttcattttta0 0 69.94 43.6726.27 Both
chr1 163 23806216 23806299 Leu CAA ttaacaaaaa tttatttttg0 0 70.82 44.4626.36 Both
chr4 22 12320120 12320203 Leu CAA ttaagcagaa tttttattat0 0 72.13 46.4225.71 Both
chr5 26 8906419 8906502 Leu CAA attgtaaaga tttaatttta0 0 72.13 46.4225.71 Both
chr5 79 21318189 21318106 Leu CAA caaacaaaaa tttttatttt0 0 72.13 46.4225.71 Both
chr4 56 13076666 13076583 Leu CAA aataaagaag ttagtttttt0 0 72.24 44.8527.39 Both
chr1 225 6948934 6948851 Leu CAA aatcaggaac ttatcttttt0 0 73.97 44.5529.42 Both
chr4 72 6837853 6837770 Leu CAA tatcaaacaa atttagattt0 0 73.97 44.5529.42 Both
chr5 32 16655394 16655477 Leu CAA aatatcaaaa tttctgtttt0 0 73.97 44.5529.42 Both
chr1 175 28031621 28031701 Leu CAG tcaacataaa tttcttttta0 0 68.96 41.9027.06 Both
chr1 28 6488646 6488726 Leu CAG aaatcaaaaa ctattgattt0 0 68.96 41.9027.06 Both
chr4 18 9289707 9289787 Leu CAG ttattaaaaa tattcttttt0 0 68.96 41.9027.06 Both
chr2 24 9291114 9291185 Leu GAG tataacaaga ctatctttca0 0 49.78 29.0220.76 Eufind
chr3 12 3090549 3090631 Leu TAA aaacagcagc gttttgcttt0 0 63.86 30.5833.28 Both
chr3 45 19648106 19648188 Leu TAA tgacatcaag tttgtatttt0 0 63.86 30.5833.28 Both
chr2 50 15327313 15327395 Leu TAA agacaagaag tatttttcct0 0 68.40 35.1233.28 Both
chr2 67 15327546 15327464 Leu TAA tattcaataa tctttctctt0 0 68.40 35.1233.28 Both
chr5 4 984366 984448 Leu TAA ataataacaa tttcccctct0 0 68.40 35.1233.28 Both
chr4 73 6837639 6837556 Leu TAA attaacaaat atttatattt0 0 74.53 47.2527.28 Both
chr4 74 5268210 5268125 Leu TAG tgaacaagtt taagatcttt0 0 41.09 19.2121.88 Eufind
chr1 75 18556667 18556746 Leu TAG tattaaaaat tcaaataatt0 0 63.97 39.0424.93 Both
chr1 76 18561568 18561647 Leu TAG ttcaacaaat tctaatgttt0 0 63.97 39.0424.93 Both
chr1 162 22890755 22890834 Leu TAG cttaacaatt aataaatttt0 0 68.10 39.4428.66 Both
chr2 49 15176657 15176736 Leu TAG atcaacaaat aatatttttt0 0 68.10 39.4428.66 Both
chr4 64 10093157 10093078 Leu TAG aaacacaaag tttagattta0 0 68.10 39.4428.66 Both
chr1 19 3881529 3881608 Leu TAG catacaacaa atttcttttc0 0 68.72 40.5228.20 Both
chr3 43 19511966 19512045 Leu TAG ataaacatct attccttttt0 0 68.72 40.5228.20 Both
chr5 115 1853382 1853303 Leu TAG aatacaacaa attattttac0 0 68.72 40.5228.20 Both
chr5 35 18807535 18807614 Leu TAG gtaataatgt atttgttttt0 0 68.72 40.5228.20 Both
 
chr4 21 11974952 11975032 Lys CTT tacgcaacga ttttctttta0 0 33.91 27.026.89 Eufind
chr4 58 13006316 13006244 Lys CTT ttaacaacaa tgaaattaca0 0 77.71 58.9218.79 Both
chr1 228 5518128 5518056 Lys CTT taagcacaaa ataatttcac0 0 84.38 62.4021.98 Both
chr1 244 309347 309275 Lys CTT aaccaacaaa atctgtataa0 0 84.38 62.4021.98 Both
chr1 30 7016507 7016579 Lys CTT caatcagcaa cttatttgtc0 0 84.38 62.4021.98 Both
chr1 4 604402 604474 Lys CTT tagtcaacaa atgcaacttt0 0 84.38 62.4021.98 Both
chr1 72 17735510 17735582 Lys CTT cgaacaacat ttatcttttg0 0 84.38 62.4021.98 Both
chr2 57 18710752 18710824 Lys CTT aaatcaaaaa ttattctttt0 0 84.38 62.4021.98 Both
chr3 31 11961646 11961718 Lys CTT tactataact cttgtttact0 0 84.38 62.4021.98 Both
chr3 64 22481288 22481216 Lys CTT ttttcaagaa atttgttatt0 0 84.38 62.4021.98 Both
chr3 67 20824568 20824496 Lys CTT catacaacaa atagttagtt0 0 84.38 62.4021.98 Both
chr4 1 33800 33872 Lys CTT acagaatgta atagtgtttt0 0 84.38 62.4021.98 Both
chr4 10 7256409 7256481 Lys CTT aaatcaccaa atttcttttt0 0 84.38 62.4021.98 Both
chr4 14 8979657 8979729 Lys CTT tagtcacaaa ctttgttttt0 0 84.38 62.4021.98 Both
chr4 60 11954824 11954752 Lys CTT taacaacaag tttcttttcc0 0 84.38 62.4021.98 Both
chr5 121 508500 508428 Lys CTT tttaacaaaa atacttttta0 0 84.38 62.4021.98 Both
chr5 15 4530476 4530548 Lys CTT gggcaacaaa acgttgtttt0 0 84.38 62.4021.98 Both
chr3 21 5632858 5632930 Lys CTT aaacatctaa cattaatttt0 0 86.03 64.0621.97 Both
chr3 10 2285608 2285679 Lys TTT atgttcaata taaaaactct0 0 81.97 56.8925.08 Both
chr5 37 19658829 19658900 Lys TTT taagcaccaa catatatttc0 0 83.16 64.0419.12 Both
chr4 27 14032496 14032567 Lys TTT ttgtcatata gtagtatatt0 0 84.12 59.0425.08 Both
chr1 182 29838010 29838081 Lys TTT ttattgttca ttttgatttg0 0 84.42 59.3425.08 Both
chr1 183 29838611 29838682 Lys TTT gtatcagctc atttgtttta0 0 84.42 59.3425.08 Both
chr2 76 11782000 11781929 Lys TTT agtaatcaaa atcatggtaa0 0 84.42 59.3425.08 Both
chr3 16 3942013 3942084 Lys TTT ataaacgtaa ttttcgtatt0 0 84.42 59.3425.08 Both
chr3 46 19935355 19935426 Lys TTT aagcatcaaa atttattttt0 0 84.42 59.3425.08 Both
chr5 14 4471051 4471122 Lys TTT aatcaacaaa attctattga0 0 84.42 59.3425.08 Both
chr5 42 21418370 21418441 Lys TTT agtcatcgaa aagtagttaa0 0 84.42 59.3425.08 Both
chr5 55 24684508 24684579 Lys TTT tatcaaaatt tcgctttgag0 0 84.42 59.3425.08 Both
chr5 82 19761472 19761401 Lys TTT ataacatgaa tttagagctt0 0 84.42 59.3425.08 Both
chr5 86 17856883 17856812 Lys TTT taaacaaata tagctctttg0 0 84.42 59.3425.08 Both
 
chr2 89 3383474 3383401 Met CAT agatccgtag ccacccctta0 0 49.74 27.4422.30 Both
chr3 49 20720152 20720223 Met CAT aaatcaaaaa taatcttttt0 0 57.66 34.7222.94 Both
chr2 90 3328739 3328667 Met CAT actcagcttg aacccggccg0 0 59.47 28.5530.92 Both
chr2 12 3462075 3462148 Met CAT gaagagaaga aaagaacaaa0 0 61.58 29.9331.65 Both
chr1 214 15733127 15733056 Met CAT tgccaagtag tcaaatgcat0 0 65.74 35.5130.23 Both
chr3 48 20704665 20704736 Met CAT tgccaagtat ttaaaatgca0 0 65.74 35.5130.23 Both
chr1 168 25944827 25944898 Met CAT acaacaacaa gtattgttac0 0 68.81 41.3727.44 Both
chr2 78 10066597 10066526 Met CAT ttaacatcaa aaatgtttcg0 0 68.81 41.3727.44 Both
chr2 79 9810368 9810297 Met CAT ctatcaaaaa atcgagtttt0 0 68.81 41.3727.44 Both
chr5 47 23463220 23463291 Met CAT ttaacaaaaa gagttttaaa0 0 68.81 41.3727.44 Both
chr5 64 26938898 26938969 Met CAT attcaaaaca taagtttttg0 0 68.81 41.3727.44 Both
chr5 77 22304923 22304852 Met CAT ttaacaaaaa attttttttt0 0 68.81 41.3727.44 Both
chr5 89 16684735 16684664 Met CAT gtatcaacaa tgttttttct0 0 69.22 42.5126.71 Both
chr1 216 11797265 11797181 Met CAT ctaacaaaat tttctcattt11797227 11797217 60.80 40.6920.11 Both
chr1 8 1324922 1325006 Met CAT atcacaaaaa aattcttttt1324960 1324970 60.94 40.8320.11 Both
chr2 70 14054503 14054419 Met CAT agtaacagtt taattttatt14054465 14054455 60.80 40.6920.11 Both
chr2 47 14847686 14847770 Met CAT attagcaatt ttcatttttt14847724 14847734 60.80 40.6920.11 Both
chr4 50 15345802 15345718 Met CAT acacagcaaa tatatttttg15345764 15345754 61.43 41.3220.11 Both
chr5 38 19820361 19820446 Met CAT gtaaacaatt caatattttt19820399 19820410 61.56 41.4620.10 Both
chr3 88 2232556 2232471 Met CAT tactaacatc attatttttt2232518 2232507 61.56 41.4620.10 Both
chr5 70 26114793 26114709 Met CAT caacaacatt atatttcttt26114755 26114745 60.93 40.8220.11 Both
chr1 187 29448903 29448819 Met CAT tatggtatct tttcgttttg29448865 29448855 60.80 40.6920.11 Both
chr1 18 3676607 3676691 Met CAT tcccaacatt tttccctttt3676645 3676655 61.43 41.3220.11 Both
chr1 220 7884443 7884359 Met CAT gtattccaaa ttactctttt7884405 7884395 60.80 40.6920.11 Both
 

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr1 167 25931859 25931931 Phe GAA taaacaagaa ttttttaatt0 0 63.59 50.3313.26 Eufind
chr1 195 25935812 25935740 Phe GAA taagcatcaa ttttttaact0 0 77.43 54.2123.22 Both
chr1 2 515494 515566 Phe GAA caaagcaaaa tttttttaat0 0 77.43 54.2123.22 Both
chr1 243 909882 909810 Phe GAA ataatcccaa tttttctaaa0 0 77.43 54.2123.22 Both
chr3 20 5275156 5275228 Phe GAA taacaacaaa tttttgtatt0 0 77.43 54.2123.22 Both
chr3 63 23062517 23062445 Phe GAA ataacaagta tttgtttttg0 0 77.43 54.2123.22 Both
chr4 26 13704788 13704860 Phe GAA ctagagcatc tttttgttat0 0 77.43 54.2123.22 Both
chr4 75 1520854 1520782 Phe GAA gttacatgaa atatttagtc0 0 77.43 54.2123.22 Both
chr4 76 808342 808270 Phe GAA taacaacaaa ttactttttt0 0 77.43 54.2123.22 Both
chr5 104 3669073 3669001 Phe GAA taagcatcaa tttttaaaaa0 0 77.43 54.2123.22 Both
chr5 117 862468 862396 Phe GAA ataacaacaa ttgttataat0 0 77.43 54.2123.22 Both
chr5 43 22091632 22091704 Phe GAA acgtcatcaa tttttctttt0 0 77.43 54.2123.22 Both
chr5 44 22094088 22094160 Phe GAA tatatcaaaa ttttgaaatt0 0 77.43 54.2123.22 Both
chr5 75 22357799 22357727 Phe GAA ttaataagtt ttttcaaatc0 0 77.43 54.2123.22 Both
chr5 76 22355970 22355898 Phe GAA agaacaagtt ttgttctcct0 0 77.43 54.2123.22 Both
chr5 96 8946899 8946827 Phe GAA atatcaacaa ttgtttttgt0 0 77.43 54.2123.22 Both
 
chr1 36 10089884 10089955 Pro AGG caaaaaagaa aatgactttt0 0 36.67 28.208.47 Eufind
chr1 44 10096937 10097008 Pro AGG agcgataacc gttcacttct0 0 64.32 41.4022.92 Both
chr1 194 26385888 26385817 Pro AGG caatcaaatt ctttgtttta0 0 69.40 39.4030.00 Both
chr1 165 25833317 25833388 Pro AGG gttgcaaatt tctcttttac0 0 71.75 43.8827.87 Both
chr1 49 10099411 10099482 Pro AGG cttaacaaga aatgactttt0 0 71.75 43.8827.87 Both
chr2 40 14360222 14360293 Pro AGG atcagcaaca cattcttttt0 0 71.75 43.8827.87 Both
chr2 44 14363134 14363205 Pro AGG atcagcaaca attgagtttt0 0 71.75 43.8827.87 Both
chr3 1 259641 259712 Pro AGG ttttcaaaga ctttctttct0 0 71.75 43.8827.87 Both
chr3 30 11076815 11076886 Pro AGG atataaaaat aatttttttc0 0 71.75 43.8827.87 Both
chr3 69 19403723 19403652 Pro AGG ttgaacaaaa tttctttttt0 0 71.75 43.8827.87 Both
chr4 3 1390895 1390966 Pro AGG acatcaaata tctattatct0 0 71.75 43.8827.87 Both
chr5 92 15844325 15844254 Pro AGG cttcaaaaat tatttttgtt0 0 71.75 43.8827.87 Both
chr1 16 2879306 2879377 Pro AGG taaacaaaaa tttataaacg0 0 72.36 44.9527.41 Both
chr1 204 22044348 22044277 Pro AGG gttcaacaac taaaatattt0 0 72.36 44.9527.41 Both
chr1 236 3431257 3431186 Pro AGG tatcatcaat ttcttttatt0 0 72.36 44.9527.41 Both
chr3 77 7567471 7567400 Pro AGG ttaacaaaaa ttcttctttt0 0 72.36 44.9527.41 Both
chr2 43 14362216 14362287 Pro CGG ttcagcacca cgatttgttt0 0 71.52 43.6527.87 Both
chr3 92 1707815 1707744 Pro CGG ttaacaaatc atcttttttt0 0 72.45 42.8129.64 Both
chr2 23 9144436 9144507 Pro CGG attatcaaaa tatgcttcaa0 0 74.22 46.4627.76 Both
chr3 83 3622769 3622698 Pro CGG tagtaacacc tacttttatg0 0 74.22 46.4627.76 Both
chr4 39 17149474 17149545 Pro CGG ccaaacaatt tctttaaatt0 0 74.22 46.4627.76 Both
chr2 16 3495009 3495083 Pro TGG cagtgagacg ttaatgtctt0 0 54.34 25.4228.92 Both
chr1 35 10089423 10089494 Pro TGG cattcaaata tttgacttct0 0 54.44 39.4215.02 Eufind
chr1 60 10108696 10108767 Pro TGG atcaataaca tttgactttt0 0 67.03 45.6921.34 Both
chr1 37 10090354 10090425 Pro TGG tatacaaaca tttgactttt0 0 73.73 45.8527.88 Both
chr1 38 10090755 10090826 Pro TGG atcaacaaca cattgacttt0 0 73.73 45.8527.88 Both
chr1 39 10092311 10092382 Pro TGG atcaacaaca ttttaaattt0 0 73.73 45.8527.88 Both
chr1 40 10092787 10092858 Pro TGG atcaacaaca cttgaccttt0 0 73.73 45.8527.88 Both
chr1 41 10093295 10093366 Pro TGG ataataagca tttgactttt0 0 73.73 45.8527.88 Both
chr1 42 10093732 10093803 Pro TGG atcaacaaca actatctttt0 0 73.73 45.8527.88 Both
chr1 43 10094159 10094230 Pro TGG aataaaacca gttaaatttt0 0 73.73 45.8527.88 Both
chr1 45 10097100 10097171 Pro TGG accaataacc tttgactttt0 0 73.73 45.8527.88 Both
chr1 46 10097704 10097775 Pro TGG tataacaaca attgaatttt0 0 73.73 45.8527.88 Both
chr1 47 10098639 10098710 Pro TGG acaaacaaca tttgactttt0 0 73.73 45.8527.88 Both
chr1 48 10099065 10099136 Pro TGG attaacaaca gttataattt0 0 73.73 45.8527.88 Both
chr1 50 10099813 10099884 Pro TGG aataagaaca attgactttt0 0 73.73 45.8527.88 Both
chr1 51 10100259 10100330 Pro TGG catataaaca cattgacttt0 0 73.73 45.8527.88 Both
chr1 52 10101014 10101085 Pro TGG catataaaca tttgactttt0 0 73.73 45.8527.88 Both
chr1 53 10101586 10101657 Pro TGG cttaataaca attgactttt0 0 73.73 45.8527.88 Both
chr1 54 10101979 10102050 Pro TGG taagaaaaca attgtctttt0 0 73.73 45.8527.88 Both
chr1 55 10106076 10106147 Pro TGG ataaacaaca tttgactttt0 0 73.73 45.8527.88 Both
chr1 56 10106514 10106585 Pro TGG catctacaca tttgactttt0 0 73.73 45.8527.88 Both
chr1 57 10106884 10106955 Pro TGG atatacaaca cattgacttt0 0 73.73 45.8527.88 Both
chr1 58 10107635 10107706 Pro TGG tataaaaaca cattgacttt0 0 73.73 45.8527.88 Both
chr1 59 10108375 10108446 Pro TGG attaacaaca cattgacttt0 0 73.73 45.8527.88 Both
chr1 65 17159047 17159118 Pro TGG caaaacaaca actgcatttt0 0 73.73 45.8527.88 Both
chr1 67 17160971 17161042 Pro TGG cttagcaaca gttgactttt0 0 73.73 45.8527.88 Both
chr1 68 17161419 17161490 Pro TGG atcaacaaca attgactctt0 0 73.73 45.8527.88 Both
chr1 69 17162968 17163039 Pro TGG tattgcaaga attgactttt0 0 73.73 45.8527.88 Both
chr1 70 17163409 17163480 Pro TGG atcaacaaca attgactttt0 0 73.73 45.8527.88 Both
chr1 71 17164462 17164533 Pro TGG attagcaaca gttgaccttt0 0 73.73 45.8527.88 Both
chr2 37 14357465 14357536 Pro TGG tccaacaatt gttgactttt0 0 73.73 45.8527.88 Both
chr2 38 14358438 14358509 Pro TGG actcaacaac attgactttt0 0 73.73 45.8527.88 Both
chr2 39 14359270 14359341 Pro TGG ctcaacaaca caggtttttt0 0 73.73 45.8527.88 Both
chr2 41 14360735 14360806 Pro TGG atcaacaaca cactgacttt0 0 73.73 45.8527.88 Both
chr2 42 14361177 14361248 Pro TGG atcaacaaca atcaactaat0 0 73.73 45.8527.88 Both
chr2 45 14363600 14363671 Pro TGG atcaacagtt gttgactttt0 0 73.73 45.8527.88 Both
chr3 90 1920110 1920039 Pro TGG aacttcataa attttaagta0 0 73.73 45.8527.88 Both
chr1 31 7082658 7082729 Pro TGG atagcaaaga tcttactttt0 0 74.34 46.9327.41 Both
chr3 27 10319499 10319570 Pro TGG agaacaacaa tttttatttt0 0 74.34 46.9327.41 Both
chr3 28 10325876 10325947 Pro TGG cataaagaaa tatttagttt0 0 74.34 46.9327.41 Both
chr4 29 14470284 14470355 Pro TGG tttatcaaaa ttctaaaatc0 0 74.34 46.9327.41 Both
chr4 55 13285503 13285432 Pro TGG atatcaatgt attcattttt0 0 74.34 46.9327.41 Both
chr5 22 6258147 6258218 Pro TGG taaacaacaa ttccttttta0 0 74.34 46.9327.41 Both
chr5 46 22973067 22973138 Pro TGG tatcaaatga atttgtattt0 0 74.34 46.9327.41 Both
chr5 83 18715960 18715889 Pro TGG aataacaatt actatttttc0 0 74.34 46.9327.41 Both
 
chr1 34 10088850 10088921 Pseudo AGG ataaacaaca gggtcaattc0 0 38.27 34.803.47 Eufind
chr1 15 2751332 2751404 Pseudo CCG ctgaccaata aattaggtaa0 0 37.42 36.580.84 Eufind
chr2 10 3437581 3437649 Pseudo GAA aagtgaggac tagctctggc0 0 29.25 9.2719.98 Eufind
chr1 63 12083875 12083945 Pseudo GCC caaacaacaa catgagctgt0 0 27.76 31.07-3.31 Eufind
chr2 13 3489586 3489654 Pseudo GTA aagtggtaac tagttagttt0 0 22.49 6.2416.25 Eufind
chr2 85 8002594 8002514 Pseudo TTC ttcgtgatat gttattcgtc0 0 32.64 9.4323.21 Eufind
chr1 173 27691824 27691895 Pseudo TTC aataatcaaa ctttttttaa0 0 46.41 47.16-0.75 Eufind
chr1 238 2464959 2464889 Pseudo TTT attgaattta ttaacaatga0 0 28.25 8.9519.30 Eufind
 
chr1 149 21306648 21306729 Ser AGA tagagaaaaa tttttatttt0 0 55.83 29.7426.09 Eufind
chr1 155 21309720 21309801 Ser AGA tagagaaaaa tttttatttt0 0 55.83 29.7426.09 Eufind
chr1 122 21293777 21293858 Ser AGA tagagaaaaa tttttatttt0 0 57.29 37.7319.56 Eufind
chr1 128 21296657 21296738 Ser AGA tagagaaaaa tttttatttt0 0 57.29 37.7319.56 Eufind
chr1 152 21308185 21308268 Ser AGA tagagaaaaa tttttatttt0 0 57.41 36.4620.95 Eufind
chr1 158 21311257 21311340 Ser AGA tagagaaaaa tttttatttt0 0 57.41 36.4620.95 Eufind
chr1 134 21299537 21299618 Ser AGA tagagaaaaa tttttatttt0 0 61.91 38.9622.95 Both
chr1 140 21302418 21302499 Ser AGA tagagaaaaa tttttatttt0 0 61.91 38.9622.95 Both
chr1 146 21305299 21305380 Ser AGA tagagaaaaa tttttatttt0 0 61.91 38.9622.95 Both
chr1 80 21272452 21272533 Ser AGA tacagaaaaa tttttatttt0 0 75.14 55.2219.92 Eufind
chr1 86 21275470 21275551 Ser AGA tacagaaaaa tttttatttt0 0 75.14 55.2219.92 Eufind
chr1 101 21283055 21283136 Ser AGA tagagaaaaa tttttatttt0 0 76.22 46.4529.77 Both
chr1 92 21278488 21278569 Ser AGA tacagaaaag tttttatttt0 0 79.70 50.5029.20 Both
chr1 98 21281526 21281607 Ser AGA tacagaaaag tttttatttt0 0 79.70 50.5029.20 Both
chr3 4 586093 586174 Ser AGA agacagacat tatttttaat0 0 81.73 51.6030.13 Both
chr1 104 21284587 21284668 Ser AGA tagagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr1 107 21286119 21286200 Ser AGA tagagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr1 110 21287651 21287732 Ser AGA tagagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr1 113 21289184 21289265 Ser AGA tagagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr1 116 21290715 21290796 Ser AGA tagagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr1 119 21292246 21292327 Ser AGA tagagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr1 125 21295126 21295207 Ser AGA tagagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr1 131 21298006 21298087 Ser AGA tagagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr1 137 21300886 21300967 Ser AGA tagagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr1 143 21303767 21303848 Ser AGA tagagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr1 172 27397047 27397128 Ser AGA ttagcaaaag tttttcattt0 0 82.22 52.0930.13 Both
chr1 184 30242676 30242757 Ser AGA actagcaaag ctttttttta0 0 82.22 52.0930.13 Both
chr1 196 24490736 24490655 Ser AGA atctcaaaca tttttagttt0 0 82.22 52.0930.13 Both
chr1 205 21887589 21887508 Ser AGA ttaacaaaaa ttttttcact0 0 82.22 52.0930.13 Both
chr1 24 5380902 5380983 Ser AGA atttcaacaa ttttttgttt0 0 82.22 52.0930.13 Both
chr1 83 21273961 21274042 Ser AGA tacagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr1 89 21276979 21277060 Ser AGA tacagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr1 95 21280017 21280098 Ser AGA tacagaaaaa tttttatttt0 0 82.22 52.0930.13 Both
chr5 20 5358919 5359000 Ser AGA acaacaagta aattttttaa0 0 82.22 52.0930.13 Both
chr5 41 20773556 20773637 Ser AGA atatcagcaa ctttttcttt0 0 82.22 52.0930.13 Both
chr3 36 17275565 17275646 Ser AGA aatcgtcctt tttttgtgtt0 0 82.83 53.1629.67 Both
chr1 25 6038750 6038831 Ser AGA gttgtcaaaa tttttccttt0 0 84.50 52.3532.15 Both
chr5 48 23661937 23662018 Ser CGA atcacgaaat ttcctaatta0 0 81.35 49.5531.80 Both
chr5 2 614642 614723 Ser CGA atacaaataa atttttaatt0 0 85.19 52.8932.30 Both
chr3 11 2944617 2944698 Ser CGA atgagcaaaa gaattgtttt0 0 85.25 53.0132.24 Both
chr4 34 15804554 15804635 Ser CGA taacaaaatt tattctattt0 0 85.25 53.0132.24 Both
chr3 65 22197892 22197811 Ser GCT aacatcaaaa tatttatttt0 0 69.54 39.4730.07 Both
chr3 78 7319664 7319583 Ser GCT tatcaaaaca tttatttttt0 0 76.07 39.1936.88 Both
chr5 69 26174496 26174415 Ser GCT tcagcaagta aatattttta0 0 78.42 43.9334.49 Both
chr3 50 21498294 21498375 Ser GCT gtaacaataa tattattttt0 0 79.46 47.4532.01 Both
chr2 61 18317134 18317053 Ser GCT acagcaagaa acttattttt0 0 79.53 46.0933.44 Both
chr4 28 14267287 14267368 Ser GCT gatcaataaa ttatcatttt0 0 79.53 46.0933.44 Both
chr5 106 3287635 3287554 Ser GCT aaacaacata atattttttt0 0 79.53 46.0933.44 Both
chr1 189 29007180 29007099 Ser GCT aaaacaataa ttatcctttt0 0 80.11 47.9732.14 Both
chr4 24 12686149 12686230 Ser GCT atagcaacaa tttcttttgt0 0 80.11 47.9732.14 Both
chr2 63 17545862 17545781 Ser GCT tggacaaaac aattctattt0 0 81.30 49.7331.57 Both
chr5 114 2060235 2060154 Ser GCT gagcatcatc aattttttca0 0 81.30 49.7331.57 Both
chr2 91 3303819 3303732 Ser GCT tcaacaactt gcgcggaagt3303781 3303774 40.19 31.458.74 Both
chr2 14 3494379 3494466 Ser GCT tcaacaactt gcgcggaagt3494417 3494424 40.19 31.458.74 Both
chr2 11 3452974 3453060 Ser GGA tcataatgta tacctttacc0 0 58.88 32.5226.36 Both
chr2 20 3503519 3503605 Ser TGA caaaagcgag cgaagtcata0 0 56.81 21.4535.36 Both
chr2 9 3369351 3369437 Ser TGA caaaagcgag cgaagtcata0 0 56.81 21.4535.36 Both
chr1 79 20794977 20795058 Ser TGA tgcacaacaa atgcgttttc0 0 80.82 48.3932.43 Both
chr4 57 13058922 13058841 Ser TGA taaacaagaa ataattttta0 0 80.82 48.3932.43 Both
chr5 80 21275141 21275060 Ser TGA tcatcaaatt gatttatttt0 0 80.82 48.3932.43 Both
chr3 87 2253762 2253681 Ser TGA taaacaaaca tttacttttt0 0 80.89 48.5132.38 Both
chr3 85 2945782 2945701 Ser TGA aatacaacaa ttttttttta0 0 81.08 48.8932.19 Both
chr5 118 642479 642398 Ser TGA ttaacgagat atagtttttt0 0 81.08 48.8932.19 Both
chr1 180 28639586 28639667 Ser TGA ttaacaagtt atattttttt0 0 81.15 49.0132.14 Both
 

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr1 211 18234220 18234147 Thr AGT agaacaaata attttttaaa0 0 70.04 47.5822.46 Both
chr4 37 16655291 16655364 Thr AGT caacagaaag gaattaattt0 0 70.04 47.5822.46 Both
chr2 69 14750627 14750554 Thr AGT gtaagcaaaa ataatctctt0 0 74.28 46.9527.33 Both
chr4 17 9287231 9287304 Thr AGT ttaacgtgta attagtaaaa0 0 74.28 46.9527.33 Both
chr4 49 15430303 15430230 Thr AGT aacagcaaaa aatttttgtt0 0 74.28 46.9527.33 Both
chr4 62 10878807 10878734 Thr AGT gttgcaagaa atatttgttt0 0 74.28 46.9527.33 Both
chr5 33 18058015 18058088 Thr AGT taacatcaaa tttttctcct0 0 74.28 46.9527.33 Both
chr3 80 6484019 6483946 Thr AGT tcagcaagca tgcttatttt0 0 75.17 48.5526.62 Both
chr4 15 9108318 9108391 Thr AGT gtaacaagat tttatttatt0 0 75.17 48.5526.62 Both
chr4 68 8301794 8301721 Thr AGT acagcaagaa acatttttgg0 0 75.17 48.5526.62 Both
chr2 46 14757143 14757213 Thr CGT aaagttagga ttttaatctt0 0 22.63 14.657.98 Eufind
chr2 97 1114052 1113981 Thr CGT tgaacaaatt ttttttaaat0 0 77.36 57.4219.94 Both
chr2 96 1123458 1123387 Thr CGT aagcatcaat tttgccaatt0 0 79.41 56.8622.55 Both
chr1 178 28444550 28444621 Thr CGT ttatcgaaaa ttcagttctt0 0 80.56 58.2522.31 Both
chr1 21 4709632 4709703 Thr CGT ttccaaaaag tcttttactc0 0 80.56 58.2522.31 Both
chr5 54 24548893 24548964 Thr CGT aatttcggat catattgatt0 0 80.56 58.2522.31 Both
chr3 52 21970487 21970557 Thr TGT tggaacaaaa cttttttatt0 0 67.75 50.3617.39 Eufind
chr2 62 18002721 18002650 Thr TGT caaagcaaaa cctttttttt0 0 73.80 49.4524.35 Both
chr1 9 1817399 1817470 Thr TGT attatcaatg cttttttatt0 0 80.35 55.9924.36 Both
chr4 4 1442005 1442076 Thr TGT taaatcaaag ctttttatcc0 0 80.35 55.9924.36 Both
chr4 8 6944722 6944793 Thr TGT ttatcaaatg ctttttgtca0 0 80.35 55.9924.36 Both
chr5 58 25347262 25347333 Thr TGT taatcaagta cctttttgtt0 0 80.35 55.9924.36 Both
chr1 197 23671219 23671148 Thr TGT agacagaaat cctttttacc0 0 81.19 54.9626.23 Both
chr3 37 17905396 17905467 Thr TGT gagcaaagtt ccttttttta0 0 81.19 54.9626.23 Both
 
chr2 6 3280860 3280933 Trp CCA tgataagaaa attccgttgc0 0 67.55 38.4829.07 Both
chr5 21 5984379 5984450 Trp CCA tctaacatcc atcccccgaa0 0 70.65 53.9716.68 Both
chr1 223 7242821 7242750 Trp CCA ataagcaagg aaaaatcccg0 0 75.00 54.5420.46 Both
chr1 185 30178977 30178906 Trp CCA aattacctga aacccccgaa0 0 77.63 55.4722.16 Both
chr1 199 22870494 22870423 Trp CCA attaattacc attccccgaa0 0 77.63 55.4722.16 Both
chr1 229 5309713 5309642 Trp CCA atagtacaaa aatatcccga0 0 77.63 55.4722.16 Both
chr1 234 3914700 3914629 Trp CCA taatcacaag aacccccggt0 0 77.63 55.4722.16 Both
chr3 5 981976 982047 Trp CCA ttgtatatcc aatcccccga0 0 77.63 55.4722.16 Both
chr3 6 984106 984177 Trp CCA agtattatcc aatcccccga0 0 77.63 55.4722.16 Both
chr4 41 18395022 18395093 Trp CCA cagtacaaca aataccccga0 0 77.63 55.4722.16 Both
chr4 66 9873596 9873525 Trp CCA ttacacatcc atcccccgaa0 0 77.63 55.4722.16 Both
chr4 67 9815287 9815216 Trp CCA aataacatcc atcccccgaa0 0 77.63 55.4722.16 Both
chr5 102 5966044 5965973 Trp CCA tataacatcc attccccgaa0 0 77.63 55.4722.16 Both
chr5 103 5962771 5962700 Trp CCA tctaacatcc atcccccgaa0 0 77.63 55.4722.16 Both
 
chr2 8 3332675 3332756 Tyr GTA taagagaaaa cttgttgtag0 0 32.67 16.5716.10 Eufind
chr2 4 3268804 3268883 Tyr GTA acaaagtggt ttcctcggac0 0 39.02 19.6419.38 Eufind
chr2 15 3494773 3494847 Tyr GTA acttttggaa tattctcgga0 0 52.74 20.5532.19 Eufind
chr2 92 3303425 3303351 Tyr GTA acttttggaa tattctcgga0 0 52.74 20.5532.19 Eufind
chr3 24 7104315 7104398 Tyr GTA gattcttcct ataattagct0 0 53.74 24.9628.78 Both
chr2 19 3497355 3497437 Tyr GTA gcccgggaag cttgttgtag0 0 56.98 35.8021.18 Both
chr4 61 11774558 11774473 Tyr GTA taaacaacat ttttttcttt11774521 11774509 77.17 49.2227.95 Both
chr2 68 15215517 15215434 Tyr GTA tagcatcaat taatcttttt15215480 15215470 76.77 48.8227.95 Both
chr2 66 15477324 15477241 Tyr GTA actgtcagta ttttaagttt15477287 15477277 76.91 48.9627.95 Both
chr3 73 17985661 17985576 Tyr GTA attgcagcat ttttttgttt17985624 17985612 76.04 48.0927.95 Both
chr4 45 18255066 18254983 Tyr GTA taataattat ctttgttccc18255029 18255019 76.77 48.8227.95 Both
chr1 73 18312571 18312655 Tyr GTA ttaagcacaa tttttaatgt18312608 18312619 76.40 48.4527.95 Both
chr1 209 19688887 19688802 Tyr GTA tattgcaata tcttttttat19688850 19688838 77.17 49.2227.95 Both
chr5 81 20758940 20758852 Tyr GTA gattgtaaat tatttttatc20758903 20758888 77.34 49.3927.95 Both
chr1 81 21272787 21272871 Tyr GTA tgatacaaaa tcataaaagt21272824 21272835 68.66 41.7226.94 Both
chr1 82 21273217 21273301 Tyr GTA agaatacaat atttgctccc21273254 21273265 74.91 45.5429.37 Both
chr1 84 21274296 21274380 Tyr GTA tgatacaaaa tcataaaagt21274333 21274344 68.66 41.7226.94 Both
chr1 85 21274726 21274810 Tyr GTA agaatacaat atttgctccc21274763 21274774 74.91 45.5429.37 Both
chr1 87 21275805 21275889 Tyr GTA tgatacaaaa tcataaaagt21275842 21275853 68.66 41.7226.94 Both
chr1 88 21276235 21276319 Tyr GTA agaatacaat atttgctccc21276272 21276283 74.91 45.5429.37 Both
chr1 90 21277314 21277398 Tyr GTA tgatacaaaa tcataaaagt21277351 21277362 68.66 41.7226.94 Both
chr1 91 21277744 21277828 Tyr GTA agaatacaat atttgctccc21277781 21277792 74.91 45.5429.37 Both
chr1 93 21278823 21278907 Tyr GTA taatacaaaa tcataaaagt21278860 21278871 74.76 45.4029.36 Both
chr1 94 21279274 21279358 Tyr GTA agaatacaat atttgctccc21279311 21279322 75.54 46.1729.37 Both
chr1 96 21280352 21280436 Tyr GTA tgatacaaaa tcataaaagt21280389 21280400 68.66 41.7226.94 Both
chr1 97 21280782 21280866 Tyr GTA agaatacaat atttgctccc21280819 21280830 74.91 45.5429.37 Both
chr1 99 21281861 21281945 Tyr GTA taatacaaaa tcataaaagt21281898 21281909 74.76 45.4029.36 Both
chr1 100 21282312 21282396 Tyr GTA agaatacaat atttgctccc21282349 21282360 75.54 46.1729.37 Both
chr1 102 21283385 21283469 Tyr GTA taatacaaaa tcattaaaat21283422 21283433 74.91 45.5429.37 Both
chr1 103 21283843 21283927 Tyr GTA agaatacaat atttgctccc21283880 21283891 74.91 45.5429.37 Both
chr1 105 21284917 21285001 Tyr GTA taatacaaaa tcattaaaat21284954 21284965 74.91 45.5429.37 Both
chr1 106 21285375 21285459 Tyr GTA agaatacaat atttgctccc21285412 21285423 63.52 41.5122.01 Both
chr1 108 21286449 21286533 Tyr GTA taatacaaaa tcattaaaat21286486 21286497 74.91 45.5429.37 Both
chr1 109 21286907 21286991 Tyr GTA agaatacaat atttgctccc21286944 21286955 74.91 45.5429.37 Both
chr1 111 21287981 21288065 Tyr GTA taatacaaaa tcattaaaat21288018 21288029 74.91 45.5429.37 Both
chr1 112 21288439 21288523 Tyr GTA agaatacaat atttgctccc21288476 21288487 74.91 45.5429.37 Both
chr1 114 21289514 21289598 Tyr GTA taatacaaaa tcattaaaat21289551 21289562 74.91 45.5429.37 Both
chr1 115 21289971 21290055 Tyr GTA agaatacaat atttgctccc21290008 21290019 74.91 45.5429.37 Both
chr1 117 21291045 21291129 Tyr GTA taatacaaaa tcattaaaat21291082 21291093 74.91 45.5429.37 Both
chr1 118 21291502 21291586 Tyr GTA agaatacaat atttgctccc21291539 21291550 74.91 45.5429.37 Both
chr1 120 21292575 21292659 Tyr GTA ataatacaaa tcattaaaat21292612 21292623 74.91 45.5429.37 Both
chr1 121 21293033 21293117 Tyr GTA agaatacaat atttgctccc21293070 21293081 74.91 45.5429.37 Both
chr1 123 21294110 21294194 Tyr GTA taatacaaaa tcataaaagt21294147 21294158 70.61 44.2326.38 Both
chr1 124 21294568 21294652 Tyr GTA agaatacaat atttgctccc21294605 21294616 65.30 37.4027.90 Both
chr1 126 21295456 21295540 Tyr GTA taatacaaaa tcattaaaat21295493 21295504 68.58 39.6328.95 Both
chr1 127 21295913 21295997 Tyr GTA ataatacaat atttgctccc21295950 21295961 74.91 45.5429.37 Both
chr1 129 21296990 21297074 Tyr GTA taatacaaaa tcataaaagt21297027 21297038 70.61 44.2326.38 Both
chr1 130 21297448 21297532 Tyr GTA agaatacaat atttgctccc21297485 21297496 65.30 37.4027.90 Both
chr1 132 21298336 21298420 Tyr GTA taatacaaaa tcattaaaat21298373 21298384 68.58 39.6328.95 Both
chr1 133 21298793 21298877 Tyr GTA ataatacaat atttgctccc21298830 21298841 74.91 45.5429.37 Both
chr1 135 21299870 21299954 Tyr GTA taatacaaaa tcataaaagt21299907 21299918 70.61 44.2326.38 Both
chr1 136 21300328 21300412 Tyr GTA agaatacaat atttgctccc21300365 21300376 63.02 37.9225.10 Eufind
chr1 138 21301216 21301300 Tyr GTA taatacaaaa tcattaaaat21301253 21301264 58.50 35.9822.52 Both
chr1 139 21301674 21301758 Tyr GTA agaatacaat atttgctccc21301711 21301722 74.91 45.5429.37 Both
chr1 141 21302751 21302835 Tyr GTA taatacaaaa tcataaaagt21302788 21302799 70.61 44.2326.38 Both
chr1 142 21303209 21303293 Tyr GTA agaatacaat atttgctccc21303246 21303257 63.02 37.9225.10 Eufind
chr1 144 21304097 21304181 Tyr GTA taatacaaaa tcattaaaat21304134 21304145 58.50 35.9822.52 Both
chr1 145 21304555 21304639 Tyr GTA agaatacaat atttgctccc21304592 21304603 74.91 45.5429.37 Both
chr1 147 21305632 21305716 Tyr GTA taatacaaaa tcataaaagt21305669 21305680 70.61 44.2326.38 Both
chr1 148 21306090 21306174 Tyr GTA agaatacaat atttgctccc21306127 21306138 58.73 36.6122.12 Eufind
chr1 150 21306982 21307066 Tyr GTA taatacaaaa tcattaaaat21307019 21307030 75.68 46.3129.37 Both
chr1 151 21307442 21307526 Tyr GTA agaatacaat atttgctccc21307479 21307490 74.91 45.5429.37 Both
chr1 153 21308521 21308600 Tyr GTA taatacaaaa tcattaaaat21308558 21308564 55.49 30.7124.78 Eufind
chr1 154 21308976 21309060 Tyr GTA agaatacaat atttgctccc21309013 21309024 74.91 45.5429.37 Both
chr1 156 21310054 21310138 Tyr GTA taatacaaaa tcattaaaat21310091 21310102 75.68 46.3129.37 Both
chr1 157 21310514 21310598 Tyr GTA agaatacaat atttgctccc21310551 21310562 74.91 45.5429.37 Both
chr1 159 21311593 21311677 Tyr GTA taatacaaaa tcattaaaat21311630 21311641 56.05 31.2724.78 Both
chr1 160 21312052 21312136 Tyr GTA agaatacaat atttgctccc21312089 21312100 74.91 45.5429.37 Both
chr5 112 2309549 2309464 Tyr GTA taatcaataa tttttttcac2309512 2309500 76.04 48.0927.95 Both
chr5 57 24856206 24856290 Tyr GTA caattaacaa tttttttctt24856243 24856254 78.43 50.4827.95 Both
chr3 84 3238461 3238372 Tyr GTA taatatcaaa tatttttaac3238424 3238408 73.56 52.0121.55 Both
chr3 22 6540637 6540721 Tyr GTA attaatgtaa tttttttttt6540674 6540685 75.91 47.9627.95 Both
chr4 7 6819288 6819371 Tyr GTA taaacacatg tttttttttc6819325 6819335 76.91 48.9627.95 Both
chr2 87 6953961 6953873 Tyr GTA atatcatcat tcttcttttt6953924 6953909 78.61 50.6627.95 Both
chr5 3 858535 858618 Tyr GTA cttaacaaaa tttttttcat858572 858582 76.91 48.9627.95 Both
chr2 84 9241356 9241273 Tyr GTA aatgaacata ttttttgtca9241319 9241309 76.13 48.1827.95 Both
 

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr1 206 21378054 21377984 Undet ??? tatacaaaga aaatattttt0 0 27.18 21.775.41 Eufind
 
chr4 78 562634 562561 Val AAC gaagcataca ctatttttag0 0 43.60 29.6513.95 Eufind
chr3 33 16902624 16902697 Val AAC gccgcatgaa aatgaattat0 0 70.95 55.3515.60 Both
chr1 217 10963627 10963554 Val AAC aagacaaaaa gttaattgct0 0 77.22 55.2721.95 Both
chr1 219 8520352 8520279 Val AAC gttcagacaa tatctttcgt0 0 77.22 55.2721.95 Both
chr1 226 6076011 6075938 Val AAC aaactaaaag ttatgttttt0 0 77.22 55.2721.95 Both
chr1 233 4267059 4266986 Val AAC atgttcaaca ttttgctttt0 0 77.22 55.2721.95 Both
chr3 32 16896876 16896949 Val AAC ttgttaaaaa ttatctttat0 0 77.22 55.2721.95 Both
chr3 34 16905148 16905221 Val AAC tagtcaaaaa tttattaatt0 0 77.22 55.2721.95 Both
chr3 39 18518797 18518870 Val AAC aacaacaaaa tttcttcttt0 0 77.22 55.2721.95 Both
chr3 53 22149700 22149773 Val AAC atgaacaaaa ttatttgctt0 0 77.22 55.2721.95 Both
chr4 9 7185698 7185771 Val AAC caagcaaaaa ataacatatg0 0 77.22 55.2721.95 Both
chr5 1 530820 530893 Val AAC aatgtcaaat atttctttta0 0 77.22 55.2721.95 Both
chr5 10 2993328 2993401 Val AAC agtgcacaaa aatttatttt0 0 77.22 55.2721.95 Both
chr5 59 25801341 25801414 Val AAC tacatgcaaa ttgtcaatac0 0 77.22 55.2721.95 Both
chr5 72 24157245 24157172 Val AAC gaagcatgta ttattttgac0 0 77.22 55.2721.95 Both
chr3 15 3575850 3575923 Val CAC ggacattaac tttttttctc0 0 85.02 60.2724.75 Both
chr2 25 9400750 9400823 Val CAC taacaaaaac tgcttttttt0 0 85.42 60.6724.75 Both
chr3 25 9840421 9840494 Val CAC acccatcaaa tatctaaaat0 0 85.42 60.6724.75 Both
chr4 42 18411259 18411332 Val CAC gatcaacaat taattttttt0 0 85.42 60.6724.75 Both
chr5 17 4929563 4929636 Val CAC tgtcatcaaa tttttttttc0 0 85.42 60.6724.75 Both
chr5 28 15242548 15242621 Val CAC ttaacaaatc attttttgtc0 0 85.42 60.6724.75 Both
chr5 73 23072070 23071997 Val CAC aagtatcaaa tatctactta0 0 85.42 60.6724.75 Both
chr5 8 1804617 1804690 Val CAC ttaataaaaa tttttttact0 0 85.42 60.6724.75 Both
chr3 41 18907852 18907924 Val TAC tcaatcatca aaccatagac0 0 76.93 49.1027.83 Both
chr4 16 9191591 9191663 Val TAC atttgttgaa gttttttcat0 0 77.60 49.1628.44 Both
chr1 1 306384 306456 Val TAC aatgccacaa attgtgtttt0 0 79.63 51.8027.83 Both
chr2 3 1154382 1154454 Val TAC ggagacatca gttttttgta0 0 79.63 51.8027.83 Both
chr2 73 12645305 12645233 Val TAC tgaacagcaa tctttttcct0 0 79.63 51.8027.83 Both
chr3 9 2222252 2222324 Val TAC ataagtatct ttttttactc0 0 79.63 51.8027.83 Both
chr5 85 17894979 17894907 Val TAC tcaacatcaa tattttttta0 0 79.63 51.8027.83 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.