Genomic tRNA Database: Arabidopsis thaliana (Feb 2004)

tRNAscan-SE Analysis of Arabidopsis thaliana (Feb 2004)

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>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 630
 Selenocysteine tRNAs (TCA) 0
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 1
 Predicted pseudogenes 8
 Total tRNAs 639
 
 
Intron Summary tRNAs with introns 
 83 Ser 
 GCT 
 2 Met 
 CAT 
 11 Tyr 
 GTA 
 70

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 16 GGC 
   CGC 
 7 TGC 
 10 33
 Gly ACC 
 1 GCC 
 23 CCC 
 5 TCC 
 12 41
 Pro AGG 
 16 GGG 
   CGG 
 5 TGG 
 45 66
 Thr AGT 
 10 GGT 
   CGT 
 6 TGT 
 8 24
 Val AAC 
 15 GAC 
   CAC 
 8 TAC 
 7 30  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 37 GGA 
 1 CGA 
 4 TGA 
 9 ACT 
   GCT 
 13   
     
   64
 Arg ACG 
 9 GCG 
   CCG 
 4 TCG 
 6   
     
   CCT 
 8 TCT 
 9 36
 Leu AAG 
 12 GAG 
 1 CAG 
 3 TAG 
 10   
     
   CAA 
 10 TAA 
 6 42
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 16   
     
   16
 Asn ATT 
   GTT 
 16   
     
   16
 Lys   
     
   CTT 
 18 TTT 
 13 31
 Asp ATC 
   GTC 
 26   
     
   26
 Glu   
     
   CTC 
 13 TTC 
 12 25
 His ATG 
   GTG 
 10   
     
   10
 Gln   
     
   CTG 
 9 TTG 
 8 17  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 19 GAT 
     
   TAT 
 5 24
 Met   
     
   CAT 
 24   
   24
 Tyr ATA 
   GTA 
 76   
     
   76
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 15   
     
   15
 Trp   
     
   CCA 
 14   
   14
 SelCys   
     
     
   TCA 
   0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.