tRNAscan-SE v.1.23 (April 2002) scan results (on host lowedev.cse.ucsc.edu)
Started: Thu Jul 17 21:50:15 PDT 2008

------------------------------------------------------------
Search Mode:                 Eukaryotic
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)

Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass (tRNAscan/EufindtRNA) Stats:
---------------
Sequences read:         8
Seqs w/at least 1 hit:  8
Bases read:             29384958 (x2 for both strands)
Bases in tRNAs:         39359
tRNAs predicted:        377
Av. tRNA length:        104
Script CPU time:        4.61 s
Scan CPU time:          21.39 s
Scan speed:             2747.5 Kbp/sec

First pass search(es) ended: Thu Jul 17 21:50:42 PDT 2008

Cove Stats:
-----------
Candidate tRNAs read:     377
Cove-confirmed tRNAs:     179
Bases scanned by covels:  44637
% seq scanned by covels:  0.1 %
Script CPU time:          1.05 s
Cove CPU time:            51.39 s
Scan speed:               868.6 bp/sec

Cove analysis of tRNAs ended: Thu Jul 17 21:51:59 PDT 2008

Summary
--------
Overall scan speed: 749234.0 bp/sec

tRNAs decoding Standard 20 AA:              178
Selenocysteine tRNAs (TCA):                 0
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   1
Predicted pseudogenes:                      0
                                            -------
Total tRNAs:                                179

tRNAs with introns:     	67

| Ala-CGC: 1 | Ala-TGC: 2 | Gly-CCC: 1 | Pro-AGG: 5 | Pro-CGG: 2 | Thr-CGT: 1 | Thr-TGT: 3 | Val-CAC: 2 | Ser-CGA: 2 | Ser-TGA: 1 | Arg-CCT: 1 | Leu-AAG: 6 | Leu-CAG: 4 | Leu-CAA: 2 | Leu-TAA: 1 | Phe-GAA: 5 | Asn-GTT: 4 | Lys-TTT: 1 | Asp-GTC: 9 | His-GTG: 1 | Gln-TTG: 2 | Ile-TAT: 1 | Met-CAT: 4 | Tyr-GTA: 5 | Cys-GCA: 1 |

Isotype / Anticodon Counts:

Ala   : 13	  AGC: 8       GGC:         CGC: 2       TGC: 3     
Gly   : 15	  ACC:         GCC: 11      CCC: 1       TCC: 3     
Pro   : 9	  AGG: 5       GGG:         CGG: 2       TGG: 2     
Thr   : 11	  AGT: 6       GGT:         CGT: 2       TGT: 3     
Val   : 10	  AAC: 7       GAC:         CAC: 2       TAC: 1     
Ser   : 12	  AGA: 5       GGA:         CGA: 2       TGA: 1       ACT:         GCT: 4     
Arg   : 16	  ACG: 9       GCG:         CCG: 2       TCG: 2       CCT: 2       TCT: 1     
Leu   : 13	  AAG: 6       GAG:         CAG: 4       TAG:         CAA: 2       TAA: 1     
Phe   : 5	  AAA:         GAA: 5                               
Asn   : 5	  ATT:         GTT: 5                               
Lys   : 9	                            CTT: 8       TTT: 1     
Asp   : 9	  ATC:         GTC: 9                               
Glu   : 12	                            CTC: 8       TTC: 4     
His   : 4	  ATG:         GTG: 4                               
Gln   : 8	                            CTG: 6       TTG: 2     
Ile   : 8	  AAT: 7       GAT:                      TAT: 1     
Met   : 8	                            CAT: 8                  
Tyr   : 5	  ATA:         GTA: 5                               
Supres: 0	                            CTA:         TTA:       
Cys   : 3	  ACA:         GCA: 3                               
Trp   : 3	                            CCA: 3                  
SelCys: 0	                                         TCA: