Genomic tRNA Database: Archaeoglobus fulgidus

tRNAscan-SE Analysis of Archaeoglobus fulgidus

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>> Genome Seq

Predicted tRNA Secondary Structures

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chr.trna11 (1-72)	Length: 72 bp
Type: Ala	Anticodon: CGC at 33-35 (33-35)	Score: 84.99
Seq: GGGCTCGTAGCTCAGCGGGAGAGCGCCGCCTTCGCGAGGCGGAGGcCGCGGGTTCAAATCCCGCCGAGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna17 (1-74)	Length: 74 bp
Type: Ala	Anticodon: GGC at 35-37 (35-37)	Score: 81.49
Seq: GGGCCGGTAGCTCAGTCtGGTAGAGCGTCGCCTTGGCATGGCGAAGGcCTGGGGTTCAAATCCCCACCGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna27 (1-72)	Length: 72 bp
Type: Ala	Anticodon: TGC at 33-35 (33-35)	Score: 85.55
Seq: GGGCTCGTAGCTCAGCGGGAGAGCGCCGCCTTTGCGAGGCGGAGGcCGCGGGTTCAAATCCCGCCGAGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna38 (1-72)	Length: 72 bp
Type: Arg	Anticodon: CCG at 34-36 (34-36)	Score: 64.74
Seq: GGGCCCGTGGGGTAGTGGAtATCCTGGAGGTCTCCGGAACCTCCGACCCGGGTTCAATTCCCGGCGGGCCCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (1-74)	Length: 74 bp
Type: Arg	Anticodon: CCT at 35-37 (35-37)	Score: 78.73
Seq: GGACCCGTAGCCTAGCAGGAcAGGGCGTGGGCCTCCTAAGCCCAAGGtCGCGGGTTCGAATCCCGCCGGGTCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna7 (1-72)	Length: 72 bp
Type: Arg	Anticodon: GCG at 34-36 (34-36)	Score: 63.73
Seq: GCCCCCGTGGGGTAGCGGAtATCCTGAGGGGCTGCGGACTCCTCGACCCGGGTTCAACTCCCGGCGGGGGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna37 (1-72)	Length: 72 bp
Type: Arg	Anticodon: TCG at 34-36 (34-36)	Score: 67.24
Seq: GCCCCCGTGGGGTAGGGGAcATCCTGGTGGCCTTCGGAGCCACAGACCCGGGTTCGATTCCCGGCGGGGGCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna35 (1-75)	Length: 75 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 87.35
Seq: GGGCCCGTGGCTCAGCAtGGAtAGAGCGACGGCCTTCTAAGCCGTAGAtCGCGGGTTCAAATCCCGCCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna2 (1-73)	Length: 73 bp
Type: Asn	Anticodon: GTT at 34-36 (34-36)	Score: 80.84
Seq: GCCGCCGTAGCTTAGCTGGTAGAGCGTCCGGCTGTTAACCGGACGGtCGCAGGTTCGAATCCTGCCGGCGGCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna43 (1-110)	Length: 110 bp
Type: Asp	Anticodon: GTC at 37-39 (37-39)	Score: 68.07
Possible intron: 41-75 (41-75)
Seq: GCCCGGGTGGTGTAGTCcGGCctATCATGCGGGCCTGTCGtggagatggggtccttaagccctaaatccgcggaaAGCCCGCGACTCGGGTTCAAATCCCGGCCCGGGCG
Str: >>>>>>>..>>>.............<<<.>>>>>..........................................<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna33 (1-72)	Length: 72 bp
Type: Cys	Anticodon: GCA at 33-35 (33-35)	Score: 53.10
Seq: GCCAGGGTGGCAGAGGGGCTATGCGGCGGACTGCAGATCCGCTTTaCCCCGGTTCGAATCCGGGCCCTGGCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna1 (1-73)	Length: 73 bp
Type: Gln	Anticodon: CTG at 35-37 (35-37)	Score: 74.31
Seq: AGCCCCGTGGGGTAGCGGTcaATCCTGCCGGACTCTGGATCCGGCGACGCCGGTTCGAATCCGGCCGGGGCTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna41 (1-73)	Length: 73 bp
Type: Gln	Anticodon: TTG at 35-37 (35-37)	Score: 74.65
Seq: AGCCCCGTGGTGTAGCGGTcaATCATGCGGGCCTTTGGAGCCCGCGACCGGGGTTCGAATCCCCGCGGGGCTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna34 (1-75)	Length: 75 bp
Type: Glu	Anticodon: CTC at 37-39 (37-39)	Score: 78.76
Seq: GCTCCGGTGGTGTAGCCcGGCcaATCATACGGGACTCTCGATCCCGTGACCCGGGTTCAAATCCCGGCCGGAGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (1-91)	Length: 91 bp
Type: Glu	Anticodon: TTC at 37-39 (37-39)	Score: 73.09
Possible intron: 41-56 (41-56)
Seq: GCTCCGGTGGTGTAGCCcGGCcaATCATTCCGGCCTTTCGaggtttcgccgaagagAGCCGGCGACCCGGGTTCAAATCCCGGCCGGAGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......................<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna16 (1-71)	Length: 71 bp
Type: Gly	Anticodon: CCC at 33-35 (33-35)	Score: 75.07
Seq: GCGGTCGTAGTCTAGCGGCAGGACACGGGCCTCCCGAGCCCGTTGCCCGGGTTCGAATCCCGGCGGCCGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (1-73)	Length: 73 bp
Type: Gly	Anticodon: GCC at 35-37 (35-37)	Score: 74.54
Seq: GCGCCGATGGTGTAGCCtGGTAACACAGGGGCTTGCCGAGCCCCTGcCCCGGGTTCAAATCCCGGTCGGCGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna9 (1-71)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (33-35)	Score: 76.94
Seq: GCGCGGGTAGTCTAGCGGTAGGACAACGCCCTTCCGAGGCGTTAGCCCGGGTTCGAATCCCGGCCCGCGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna8 (1-72)	Length: 72 bp
Type: His	Anticodon: GTG at 34-36 (34-36)	Score: 56.25
Seq: GCCCGGATGGGGTAGTGGTtATCCTCTGGGACTGTGGATCCCAGGAGCCGGGTTCGAATCCCGGTCCGGGCC
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna47 (1-75)	Length: 75 bp
Type: Ile	Anticodon: GAT at 36-38 (36-38)	Score: 87.59
Seq: GGGCCCGTGGCTCAGCCtGGTtAGAGCGCTCGCCTGATAAGCGAGAGGtCCGGGGTTCGAACCCCCGCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna39 (1-98)	Length: 98 bp
Type: Leu	Anticodon: CAA at 35-37 (35-37)	Score: 62.59
Possible intron: 39-53 (39-53)
Seq: GCGGGGGTTGCCGAGTGGCcaAAGGCGGTGGACTCAAGacctgatggggagaaATCCACTCCCGTAGGGGTtCGAGGGTTCGAATCCCTCCCCCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>......................<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna6 (1-83)	Length: 83 bp
Type: Leu	Anticodon: CAG at 35-37 (35-37)	Score: 64.98
Seq: GCGGGGGTTGCCGAGCGGAcaAAGGCGCGGGATTCAGGGTCCCGTCCCGTAGGGGTtCGAGGGTTCGAATCCCTCCCCCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna4 (1-83)	Length: 83 bp
Type: Leu	Anticodon: GAG at 35-37 (35-37)	Score: 65.64
Seq: GCGGGGGTTGCCGAGCGGAcaAAGGCGCAGGATTGAGGGTCCTGTCCCGTAGGGGTtCGAGGGTTCGAATCCCTCCCCCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna25 (1-84)	Length: 84 bp
Type: Leu	Anticodon: TAA at 36-38 (36-38)	Score: 74.40
Seq: GCGGGGGTTGCCGAGCCaGGAaAAGGCGCAGGGCTTAAGACCCTGTCCCGAAGGGGTcCGCGGGTTCGAATCCCGCCCCCCGCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna42 (1-83)	Length: 83 bp
Type: Leu	Anticodon: TAG at 35-37 (35-37)	Score: 67.50
Seq: GCGGGGGTTGCCGAGCGGCcaAAGGCGCTGGATTTAGGGTCCAGTCCCGTAGGGGTtCGAGGGTTCGAATCCCTCCCCCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1-74)	Length: 74 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 84.04
Seq: GGGCCGGTAGCTTAGCCaGGCAGAGCGCGGGACTCTTAATCCCGCAGtCGGGGGTTCAAATCCCTCCCGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (1-74)	Length: 74 bp
Type: Lys	Anticodon: TTT at 35-37 (35-37)	Score: 86.34
Seq: GGGCTCGTAGCTCAGCCaGGCAGAGCGACGGGCTTTTAACCCGTCGGtCGCGGGTTCAAATCCCGTCGAGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna46 (1-75)	Length: 75 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 71.77
Seq: AGCGGGGTGGGGTAGTCaGGTgATCCCGGCGGGCTCATAACCCGCAGAtCCGTGGTTCAAATCCACGCCCCGCTA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna5 (1-74)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 80.05
Seq: GCCGAGGTAGCCTAGCTGGTtGGGGCGCCTGACTCATAATCAGGAGGtCGGGGGTTCGAATCCCCCCCTCGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna22 (1-75)	Length: 75 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 89.54
Seq: GGGCCCGTAGCTTAGCCaGGTcAGAGCGCCCGGCTCATAACCGGGCGGtCGAGGGTTCGAATCCCTCCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna24 (1-74)	Length: 74 bp
Type: Phe	Anticodon: GAA at 35-37 (35-37)	Score: 76.54
Seq: GCCCGGGTAGCTCAGCCaGGGAGAGCGTGCGGCTGAAGACCGCATAGtCCCCGGTTCAAATCCGGGTCCGGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna12 (1-74)	Length: 74 bp
Type: Pro	Anticodon: CGG at 36-38 (36-38)	Score: 72.82
Seq: GGGGCCGTGGGGTAGCCtGGTgATCCTGCGGCGTTCGGGACGCCGTGACCCGAGTTCAAATCTCGGCGGCCCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna23 (1-73)	Length: 73 bp
Type: Pro	Anticodon: GGG at 35-37 (35-37)	Score: 73.97
Seq: GGGGCCGTGGGGTAGCCtGGTAGCCTCTCGGCCTGGGGCGCCGGTGACCCGAGTTCAAATCTCGGCGGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (1-74)	Length: 74 bp
Type: Pro	Anticodon: TGG at 36-38 (36-38)	Score: 71.26
Seq: GGGGCCGTAGGGTAGCCtGGTgATCCTCTCGGCTTTGGGAGCCGGTGACCCGAGTTCAAATCTCGGCGGCCCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna36 (1-85)	Length: 85 bp
Type: Ser	Anticodon: CGA at 36-38 (36-38)	Score: 59.23
Seq: GCCGGGGTTGCAGAGCCaGGCcACTGCGGGAGACTCGAGATCTCCTGCCCGAAAgGGCGCGTGGGTTCGAATCCCACCCCCGGCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...>>.....<<...>>>>>.......<<<<<<<<<<<<.

chr.trna45 (1-81)	Length: 81 bp
Type: Ser	Anticodon: GCT at 33-35 (33-35)	Score: 76.22
Seq: GCCGGGGTTGCCGAGCGGTAAGGCGACGGCCTGCTAAGCCGTTGGGCGTTGCCCGCGTGGGTTCGAATCCCACCCCCGGCG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<..>>......<<..>>>>>.......<<<<<<<<<<<<.

chr.trna31 (1-82)	Length: 82 bp
Type: Ser	Anticodon: GGA at 33-35 (33-35)	Score: 71.99
Seq: GCCGGGGTTGCCGAGCGGTAAGGCGCACGCCTGGAGAGCGTGTGGGCGTTCgCCCGCGTGGGTTCGAATCCCACCCCCGGCG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<..>>.......<<..>>>>>.......<<<<<<<<<<<<.

chr.trna40 (1-82)	Length: 82 bp
Type: Ser	Anticodon: TGA at 33-35 (33-35)	Score: 66.11
Seq: GCCGGGGTTGCAGAGAGGTACTGCGCCAGCCTTGAGAGCTGGTGCCCGTAAGGGCtCCTGGGTTCAAATCCCAGCCCCGGCG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna32 (1-73)	Length: 73 bp
Type: Thr	Anticodon: CGT at 34-36 (34-36)	Score: 80.76
Seq: GCCGCCGTGGCTCAGCTGGCAGAGCGGGTGATTCGTAATCACCAGGtCGCGGGTTCAAATCCCGCCGGCGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna14 (1-73)	Length: 73 bp
Type: Thr	Anticodon: GGT at 34-36 (34-36)	Score: 79.36
Seq: GCCACGGTAGCTCAGCAGGAAGAGCGCGTGCTTGGTAAGCACGAGGtCCCGGGTTCAAATCCCGGCCGTGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna29 (1-73)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (34-36)	Score: 83.16
Seq: GCCGCCGTGGCTCAGCTGGCAGAGCGGGTGACTTGTAATCACCAGGtCGCGGGTTCAAATCCCGCCGGCGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna21 (1-136)	Length: 136 bp
Type: Trp	Anticodon: CCA at 35-37 (35-37)	Score: 65.73
Possible intron: 39-100 (39-100)
Seq: GGGGTCGTGGCGTAGCCaGGAAGCGCGGCGGGCTCCAGcggcgtgatgattgacgggtctgctgagcggtgatgacccgttggagctctgacccgaagagACCCGCCAGtCGTGGGTTCAAATCCCACCGGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.....................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna28 (1-96)	Length: 96 bp
Type: Tyr	Anticodon: GTA at 33-35 (33-35)	Score: 62.67
Possible intron: 37-60 (37-60)
Seq: CCCGCCTTAGCTCAGAGGTAGAGCGTGGGACTGTAGtccgccactccgcggcaggcggagATCCCATGGtCCCCGGTTCAAATCCGGGAGGCGGGA
Str: >>>>>>>..>>>>.......<<<<.>>>>>...............................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna44 (1-73)	Length: 73 bp
Type: Val	Anticodon: CAC at 34-36 (34-36)	Score: 80.34
Seq: GGGCTCGTGGTCTAGTGGTtATGACGCCTGCCTCACACGCAGGAGGtCCCCGGTTCGAATCCGGGCGAGCCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1-70)	Length: 70 bp
Type: Val	Anticodon: GAC at 31-33 (31-33)	Score: 27.36
Seq: GCTCTCCTCCCTCCATTtGAACGTCGCCTTGACGAGGCGAAGGtCCCCGGTTCGAATCCGGGCGAGCCCA
Str: >..>>>.....>>.....<<...>>>>>.......<<<<<.....>>>>>.......<<<<<.<<<..<.

chr.trna19 (1-73)	Length: 73 bp
Type: Val	Anticodon: GAC at 34-36 (34-36)	Score: 69.45
Seq: GGGCTCGTGGTCTAGGGGTcATGACGTCGCCTTGACGAGGCGAAGGtCGCCCGTTCGAATCGGGCCGAGCCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna30 (1-73)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (34-36)	Score: 81.00
Seq: GGGCTCGTGGTCTAGCGGTtATGACGTCGCCCTTACAAGGCGGAGAtCGCCGGTTCGAATCCGGCCGAGCCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.