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tRNAscan-SE Analysis of Archaeoglobus fulgidus

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tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 1 81733 81805 View Gln CTG ttcgaatcga tctgttttgt 0 0 74.31 54.60 19.71   chr 2 240567 240639 View Asn GTT gagagcaaga tattgtcgcc 0 0 80.84 63.58 17.26   chr 3 367982 368055 View Arg CCT cttggaaaga cttctgttct 0 0 78.73 65.11 13.62   chr 4 398197 398279 View Leu GAG tttcatctga tttagttctg 0 0 65.64 45.91 19.73   chr 5 424890 424963 View Met CAT atggcattga tggttgaaaa 0 0 80.05 63.68 16.37   chr 6 515561 515643 View Leu CAG taggccctga ctgaattcgg 0 0 64.98 44.72 20.26   chr 7 616419 616490 View Arg GCG tttccacgtc tggaattttt 0 0 63.73 45.50 18.23   chr 8 714318 714389 View His GTG cctccgaatg ctttaaaacc 0 0 56.25 35.46 20.79   chr 9 778083 778153 View Gly TCC gcaatgacaa cattggtttt 0 0 76.94 61.09 15.85   chr 10 788605 788695 View Glu TTC tcaatcctaa ttatcctttt 788645 788660 73.09 58.19 14.90   chr 11 964112 964183 View Ala CGC aaaggttcaa tgttttttct 0 0 84.99 72.02 12.97   chr 12 1006371 1006444 View Pro CGG ccgctttcat tctgctttaa 0 0 72.82 51.04 21.78   chr 13 1262640 1262712 View Gly GCC aggctatcaa tagcactttt 0 0 74.54 56.96 17.58   chr 14 1320292 1320364 View Thr GGT agcatttcag tgctttattt 0 0 79.36 63.22 16.14   chr 15 1696296 1696369 View Lys TTT taatggatga tatttaaaaa 0 0 86.34 72.60 13.74   chr 16 1842387 1842457 View Gly CCC aagcgtacaa ctgttttttg 0 0 75.07 64.19 10.88   chr 17 1884704 1884777 View Ala GGC actcatccaa tgccatattc 0 0 81.49 65.29 16.20   chr 18 2011702 2011775 View Lys CTT caatcatgca ctgtttgtga 0 0 84.04 72.92 11.12   chr 19 2088004 2088076 View Val GAC agacaaacag ctaaattctt 0 0 69.45 44.31 25.14   chr 20 2104947 2105016 View Val GAC acttcagact tttttctctt 0 0 27.36 21.69 5.67   chr 21 2141721 2141586 View Trp CCA catttaacga tttttattta 2141683 2141622 65.73 52.31 13.42   chr 22 2024579 2024505 View Met CAT tttacccaga tcaggaaaac 0 0 89.54 76.63 12.91   chr 23 1993575 1993503 View Pro GGG tatttttgct ctttaaatag 0 0 73.97 58.74 15.23   chr 24 1977911 1977838 View Phe GAA aataggttaa tttctatcct 0 0 76.54 58.42 18.12   chr 25 1960974 1960891 View Leu TAA atttttccaa tgctttttac 0 0 74.40 56.63 17.77   chr 26 1810428 1810355 View Pro TGG tcattacaga tcattgaact 0 0 71.26 54.77 16.49   chr 27 1788935 1788864 View Ala TGC acaagcccaa ttattacgtg 0 0 85.55 72.58 12.97   chr 28 1766013 1765918 View Tyr GTA agctatcgaa cttgaatgct 1765977 1765954 62.67 37.59 25.08   chr 29 1694428 1694356 View Thr TGT accccatgct ttcctgataa 0 0 83.16 65.76 17.40   chr 30 1537568 1537496 View Val TAC accactccaa tttttgtttt 0 0 81.00 64.70 16.30   chr 31 1369466 1369385 View Ser GGA gaggcgttag ctgttgtatc 0 0 71.99 47.05 24.94   chr 32 1345381 1345309 View Thr CGT aggctgatga tgcaatattg 0 0 80.76 63.37 17.39   chr 33 1317544 1317473 View Cys GCA tccttatcaa ctctttattt 0 0 53.10 30.78 22.32   chr 34 1155813 1155739 View Glu CTC gcagagataa ctgcttttta 0 0 78.76 61.48 17.28   chr 35 1142830 1142756 View Arg TCT ctacccttaa ctccaatcta 0 0 87.35 75.53 11.82   chr 36 1003139 1003055 View Ser CGA ctaaggctaa cttaccagat 0 0 59.23 30.64 28.59   chr 37 985809 985738 View Arg TCG ccttttttct tcagaaagta 0 0 67.24 49.67 17.57   chr 38 780729 780658 View Arg CCG tataatttgg gtattttttg 0 0 64.74 43.92 20.82   chr 39 766944 766847 View Leu CAA gcttgcctga tcactgaacc 766906 766892 62.59 39.81 22.78   chr 40 701296 701215 View Ser TGA tctggaaaaa ctgggggtat 0 0 66.11 39.77 26.34   chr 41 558013 557941 View Gln TTG gactttatga tgtctaaaat 0 0 74.65 55.29 19.36   chr 42 319266 319184 View Leu TAG cgcaatttaa tgatttagct 0 0 67.50 47.65 19.85   chr 43 235858 235749 View Asp GTC agagccacaa ctctcatcgc 235818 235784 68.07 53.04 15.03   chr 44 235571 235499 View Val CAC caacccttaa tttatttctt 0 0 80.34 63.08 17.26   chr 45 232349 232269 View Ser GCT gaaaagttga ctgaaacttt 0 0 76.22 51.85 24.37   chr 46 117636 117562 View Met CAT agtgttctga tttgcccagc 0 0 71.77 44.19 27.58   chr 47 73342 73268 View Ile GAT agctgactga tttttaaggt 0 0 87.59 73.07 14.52   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.