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tRNAscan-SE Analysis of Archaeoglobus fulgidus

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 11 964112 964183 View Ala CGC aaaggttcaa tgttttttct 0 0 84.99 72.02 12.97   chr 17 1884704 1884777 View Ala GGC actcatccaa tgccatattc 0 0 81.49 65.29 16.20   chr 27 1788935 1788864 View Ala TGC acaagcccaa ttattacgtg 0 0 85.55 72.58 12.97     chr 38 780729 780658 View Arg CCG tataatttgg gtattttttg 0 0 64.74 43.92 20.82   chr 3 367982 368055 View Arg CCT cttggaaaga cttctgttct 0 0 78.73 65.11 13.62   chr 7 616419 616490 View Arg GCG tttccacgtc tggaattttt 0 0 63.73 45.50 18.23   chr 37 985809 985738 View Arg TCG ccttttttct tcagaaagta 0 0 67.24 49.67 17.57   chr 35 1142830 1142756 View Arg TCT ctacccttaa ctccaatcta 0 0 87.35 75.53 11.82     chr 2 240567 240639 View Asn GTT gagagcaaga tattgtcgcc 0 0 80.84 63.58 17.26     chr 43 235858 235749 View Asp GTC agagccacaa ctctcatcgc 235818 235784 68.07 53.04 15.03     chr 33 1317544 1317473 View Cys GCA tccttatcaa ctctttattt 0 0 53.10 30.78 22.32     chr 1 81733 81805 View Gln CTG ttcgaatcga tctgttttgt 0 0 74.31 54.60 19.71   chr 41 558013 557941 View Gln TTG gactttatga tgtctaaaat 0 0 74.65 55.29 19.36     chr 34 1155813 1155739 View Glu CTC gcagagataa ctgcttttta 0 0 78.76 61.48 17.28   chr 10 788605 788695 View Glu TTC tcaatcctaa ttatcctttt 788645 788660 73.09 58.19 14.90     chr 16 1842387 1842457 View Gly CCC aagcgtacaa ctgttttttg 0 0 75.07 64.19 10.88   chr 13 1262640 1262712 View Gly GCC aggctatcaa tagcactttt 0 0 74.54 56.96 17.58   chr 9 778083 778153 View Gly TCC gcaatgacaa cattggtttt 0 0 76.94 61.09 15.85     chr 8 714318 714389 View His GTG cctccgaatg ctttaaaacc 0 0 56.25 35.46 20.79     chr 47 73342 73268 View Ile GAT agctgactga tttttaaggt 0 0 87.59 73.07 14.52     chr 39 766944 766847 View Leu CAA gcttgcctga tcactgaacc 766906 766892 62.59 39.81 22.78   chr 6 515561 515643 View Leu CAG taggccctga ctgaattcgg 0 0 64.98 44.72 20.26   chr 4 398197 398279 View Leu GAG tttcatctga tttagttctg 0 0 65.64 45.91 19.73   chr 25 1960974 1960891 View Leu TAA atttttccaa tgctttttac 0 0 74.40 56.63 17.77   chr 42 319266 319184 View Leu TAG cgcaatttaa tgatttagct 0 0 67.50 47.65 19.85     chr 18 2011702 2011775 View Lys CTT caatcatgca ctgtttgtga 0 0 84.04 72.92 11.12   chr 15 1696296 1696369 View Lys TTT taatggatga tatttaaaaa 0 0 86.34 72.60 13.74     chr 46 117636 117562 View Met CAT agtgttctga tttgcccagc 0 0 71.77 44.19 27.58   chr 5 424890 424963 View Met CAT atggcattga tggttgaaaa 0 0 80.05 63.68 16.37   chr 22 2024579 2024505 View Met CAT tttacccaga tcaggaaaac 0 0 89.54 76.63 12.91     chr 24 1977911 1977838 View Phe GAA aataggttaa tttctatcct 0 0 76.54 58.42 18.12     chr 12 1006371 1006444 View Pro CGG ccgctttcat tctgctttaa 0 0 72.82 51.04 21.78   chr 23 1993575 1993503 View Pro GGG tatttttgct ctttaaatag 0 0 73.97 58.74 15.23   chr 26 1810428 1810355 View Pro TGG tcattacaga tcattgaact 0 0 71.26 54.77 16.49     chr 36 1003139 1003055 View Ser CGA ctaaggctaa cttaccagat 0 0 59.23 30.64 28.59   chr 45 232349 232269 View Ser GCT gaaaagttga ctgaaacttt 0 0 76.22 51.85 24.37   chr 31 1369466 1369385 View Ser GGA gaggcgttag ctgttgtatc 0 0 71.99 47.05 24.94   chr 40 701296 701215 View Ser TGA tctggaaaaa ctgggggtat 0 0 66.11 39.77 26.34     chr 32 1345381 1345309 View Thr CGT aggctgatga tgcaatattg 0 0 80.76 63.37 17.39   chr 14 1320292 1320364 View Thr GGT agcatttcag tgctttattt 0 0 79.36 63.22 16.14   chr 29 1694428 1694356 View Thr TGT accccatgct ttcctgataa 0 0 83.16 65.76 17.40     chr 21 2141721 2141586 View Trp CCA catttaacga tttttattta 2141683 2141622 65.73 52.31 13.42     chr 28 1766013 1765918 View Tyr GTA agctatcgaa cttgaatgct 1765977 1765954 62.67 37.59 25.08     chr 44 235571 235499 View Val CAC caacccttaa tttatttctt 0 0 80.34 63.08 17.26   chr 20 2104947 2105016 View Val GAC acttcagact tttttctctt 0 0 27.36 21.69 5.67   chr 19 2088004 2088076 View Val GAC agacaaacag ctaaattctt 0 0 69.45 44.31 25.14   chr 30 1537568 1537496 View Val TAC accactccaa tttttgtttt 0 0 81.00 64.70 16.30   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.