GtRNAdb

tRNAscan-SE Analysis of Archaeoglobus fulgidus

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGGTAGCTCAGTCtGGTA.GAGCGTCGCCTTGGCATGGCGAAG...........GcCTGGGGTTCAAATCCCCACCGGTCCA... chr.trna17-AlaGGC Sc: 81.49 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTCGTAGCTCAGC..GGGA.GAGCGCCGCCTTCGCGAGGCGGAG...........GcCGCGGGTTCAAATCCCGCCGAGTCCA... chr.trna11-AlaCGC Sc: 84.99 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTCGTAGCTCAGC..GGGA.GAGCGCCGCCTTTGCGAGGCGGAG...........GcCGCGGGTTCAAATCCCGCCGAGTCCA... chr.trna27-AlaTGC Sc: 85.55

Arg tRNAs

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCCGTGGGGTAGC..GGAtA.TCCTGAGGGGCTGCGGACTCCTCG...........A.CCCGGGTTCAACTCCCGGCGGGGGCA... chr.trna7-ArgGCG Sc: 63.73 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTGGGGTAGT..GGAtA.TCCTGGAGGTCTCCGGAACCTCCG...........A.CCCGGGTTCAATTCCCGGCGGGCCCG... chr.trna38-ArgCCG Sc: 64.74 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCCGTGGGGTAGG..GGAcA.TCCTGGTGGCCTTCGGAGCCACAG...........A.CCCGGGTTCGATTCCCGGCGGGGGCG... chr.trna37-ArgTCG Sc: 67.24 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGACCCGTAGCCTAGCA.GGAcA.GGGCGTGGGCCTCCTAAGCCCAAG...........GtCGCGGGTTCGAATCCCGCCGGGTCCG... chr.trna3-ArgCCT Sc: 78.73 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTGGCTCAGCAtGGAtA.GAGCGACGGCCTTCTAAGCCGTAG...........AtCGCGGGTTCAAATCCCGCCGGGTCCG... chr.trna35-ArgTCT Sc: 87.35

Asn tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGCCGTAGCTTAGCTGGTAGAGCGTCCGGCTGTTAACCGGACG...........GtCGCAGGTTCGAATCCTGCCGGCGGCG... chr.trna2-AsnGTT Sc: 80.84

Asp tRNAs

>>>>>>>..>>>.............<<<.>>>>>..........................................<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCCCGGGTGGTGTAGTCcGGCctATCATGCGGGCCTGTCGtggagatggggtccttaagccctaaatccgcggaaAGCCCGCG...........ACTCGGGTTCAAATCCCGGCCCGGGCG... chr.trna43-AspGTC Sc: 68.07

Cys tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCAGGGTGGCAGAGGGGCT.ATGCGGCGGACTGCAGATCCGCTT...........TaCCCCGGTTCGAATCCGGGCCCTGGCT... chr.trna33-CysGCA Sc: 53.10

Gln tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... AGCCCCGTGGGGTAGCGGTcaA.TCCTGCCGGACTCTGGATCCGGCG...........ACGCCGGTTCGAATCCGGCCGGGGCTA... chr.trna1-GlnCTG Sc: 74.31 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... AGCCCCGTGGTGTAGCGGTcaA.TCATGCGGGCCTTTGGAGCCCGCG...........ACCGGGGTTCGAATCCCCGCGGGGCTA... chr.trna41-GlnTTG Sc: 74.65

Glu tRNAs

>>>>>>>..>>>.............<<<.>>>>>.......................<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCTCCGGTGGTGTAGCCcGGCcaATCATACGGGACTCTCG................ATCCCGTG...........ACCCGGGTTCAAATCCCGGCCGGAGCA... chr.trna34-GluCTC Sc: 78.76 >>>>>>>..>>>.............<<<.>>>>>.......................<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCTCCGGTGGTGTAGCCcGGCcaATCATTCCGGCCTTTCGaggtttcgccgaagagAGCCGGCG...........ACCCGGGTTCAAATCCCGGCCGGAGCA... chr.trna10-GluTTC Sc: 73.09

Gly tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGCCGATGGTGTAGCCtGGTA.ACACAGGGGCTTGCCGAGCCCCT............GcCCCGGGTTCAAATCCCGG.TCGGCGCA... chr.trna13-GlyGCC Sc: 74.54 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGTCGTAGTCTAGC..GGCA.GGACACGGGCCTCCCGAGCCCGTT...........G.CCCGGGTTCGAATCCCGG.CGGCCGCA... chr.trna16-GlyCCC Sc: 75.07 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGCGGGTAGTCTAGC..GGTA.GGACAACGCCCTTCCGAGGCGTTA...........G.CCCGGGTTCGAATCCCGG.CCCGCGCA... chr.trna9-GlyTCC Sc: 76.94

His tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCCCGGATGGGGTAGTGGTtA.TCCTCTGGGACTGTGGATCCCAGG...........AGCCGGGTTCGAATCCCGGTCCGGGCC... chr.trna8-HisGTG Sc: 56.25

Ile tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTGGCTCAGCCtGGTtAGAGCGCTCGCCTGATAAGCGAGAG...........GtCCGGGGTTCGAACCCCCGCGGGCCCA... chr.trna47-IleGAT Sc: 87.59

Leu tRNAs

>>>>>>>..>>>..............<<<.>>>>>......................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTTGCCGAGC..GGAcaA.AGGCGCAGGATTGAGG...............GTCCTGTCCCGTAG....GGGTtCGAGGGTTCGAATCCCTC.CCCCCGCA... chr.trna4-LeuGAG Sc: 65.64 >>>>>>>..>>>..............<<<.>>>>>......................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTTGCCGAGC..GGAcaA.AGGCGCGGGATTCAGG...............GTCCCGTCCCGTAG....GGGTtCGAGGGTTCGAATCCCTC.CCCCCGCA... chr.trna6-LeuCAG Sc: 64.98 >>>>>>>..>>>..............<<<.>>>>>......................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTTGCCGAGC..GGCcaA.AGGCGCTGGATTTAGG...............GTCCAGTCCCGTAG....GGGTtCGAGGGTTCGAATCCCTC.CCCCCGCA... chr.trna42-LeuTAG Sc: 67.50 >>>>>>>..>>>..............<<<.>>>>>......................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTTGCCGAGT..GGCcaA.AGGCGGTGGACTCAAGacctgatggggagaaATCCACTCCCGTAG....GGGTtCGAGGGTTCGAATCCCTC.CCCCCGCA... chr.trna39-LeuCAA Sc: 62.59 >>>>>>>..>>>..............<<<.>>>>>......................<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGGGTTGCCGAGCCaGGAa.A.AGGCGCAGGGCTTAAG...............ACCCTGTCCCGAAG....GGGTcCGCGGGTTCGAATCCCGC.CCCCCGCA... chr.trna25-LeuTAA Sc: 74.40

Lys tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGGTAGCTTAGCCaGGCAGAGCGCGGGACTCTTAATCCCGCA...........GtCGGGGGTTCAAATCCCTCCCGGCCCG... chr.trna18-LysCTT Sc: 84.04 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTCGTAGCTCAGCCaGGCAGAGCGACGGGCTTTTAACCCGTCG...........GtCGCGGGTTCAAATCCCGTCGAGCCCG... chr.trna15-LysTTT Sc: 86.34

Met tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTTAGCCaGGTcAGAGCGCCCGGCTCATAACCGGGCG...........GtCGAGGGTTCGAATCCCTCCGGGCCCA... chr.trna22-MetCAT Sc: 89.54 GCCGAGGTAGCCTAGCT.GGTtGGGGCGCCTGACTCATAATCAGGAG...........GtCGGGGGTTCGAATCCCCCCCTCGGCA... chr.trna5-MetCAT Sc: 80.05 >>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGCGGGGTGGGGTAGTCaGGTgATCCCGGCGGGCTCATAACCCGCAG...........AtCCGTGGTTCAAATCCACGCCCCGCTA... chr.trna46-MetCAT Sc: 71.77

Phe tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCGGGTAGCTCAGCCaGGGAGAGCGTGCGGCTGAAGACCGCATA...........GtCCCCGGTTCAAATCCGGGTCCGGGCA... chr.trna24-PheGAA Sc: 76.54

Pro tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGGGCCGTGGGGTAGCCtGGT.AGCCTCTCGGCCTGGGGCGCCGGTG...........ACCCGAGTTCAAATCTCGGCGGCCCCA... chr.trna23-ProGGG Sc: 73.97 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGGGCCGTGGGGTAGCCtGGTgATCCTGCGGCGTTCGGGACGCCGTG...........ACCCGAGTTCAAATCTCGGCGGCCCCA... chr.trna12-ProCGG Sc: 72.82 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGGGCCGTAGGGTAGCCtGGTgATCCTCTCGGCTTTGGGAGCCGGTG...........ACCCGAGTTCAAATCTCGGCGGCCCCA... chr.trna26-ProTGG Sc: 71.26

SeC tRNAs

Ser tRNAs

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>...........<<...>>>>>.......<<<<<<<<<<<<.... GCCGGGGTTGCCGAGC..GGT.A.AGGCGCACGCCTGGAGAGCGTGTGGGCGTTCg....CCCG.CGTGGGTTCGAATCCCACCCCCGGCG... chr.trna31-SerGGA Sc: 71.99 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<...>>.........<<....>>>>>.......<<<<<<<<<<<<.... GCCGGGGTTGCAGAGCCaGGCcA.CTGCGGGAGACTCGAGATCTCCTGCCCGAAAg....GGCG.CGTGGGTTCGAATCCCACCCCCGGCG... chr.trna36-SerCGA Sc: 59.23 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<<<<<<<<.... GCCGGGGTTGCAGAGA..GGT.A.CTGCGCCAGCCTTGAGAGCTGGTGCCCGTAA.....GGGCtCCTGGGTTCAAATCCCAGCCCCGGCG... chr.trna40-SerTGA Sc: 66.11 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>...........<<...>>>>>.......<<<<<<<<<<<<.... GCCGGGGTTGCCGAGC..GGT.A.AGGCGACGGCCTGCTAAGCCGTTGGGCGTTG.....CCCG.CGTGGGTTCGAATCCCACCCCCGGCG... chr.trna45-SerGCT Sc: 76.22

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCACGGTAGCTCAGCAGGAAGAGCGCGTGCTTGGTAAGCACGAG...........GtCCCGGGTTCAAATCCCGGCCGTGGCT... chr.trna14-ThrGGT Sc: 79.36 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGCCGTGGCTCAGCTGGCAGAGCGGGTGATTCGTAATCACCAG...........GtCGCGGGTTCAAATCCCGCCGGCGGCT... chr.trna32-ThrCGT Sc: 80.76 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGCCGTGGCTCAGCTGGCAGAGCGGGTGACTTGTAATCACCAG...........GtCGCGGGTTCAAATCCCGCCGGCGGCT... chr.trna29-ThrTGT Sc: 83.16

Trp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.....................................................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGTCGTGGCGTAGCCaGGAAGCGCGGCGGGCTCCAGcggcgtgatgattgacgggtctgctgagcggtgatgacccgttggagctctgacccgaagagACCCGCCA...........GtCGTGGGTTCAAATCCCACCGGCCCCA... chr.trna21-TrpCCA Sc: 65.73

Tyr tRNAs

>>>>>>>..>>>>........<<<<.>>>>>...............................<<<<<................>>>>>.......<<<<<<<<<<<<.... CCCGCCTTAGCTCAGAGGTA.GAGCGTGGGACTGTAGtccgccactccgcggcaggcggagATCCCATG...........GtCCCCGGTTCAAATCCGGGAGGCGGGA... chr.trna28-TyrGTA Sc: 62.67

Val tRNAs

>>>>>>>..>>>................<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTCGTGGTCTAGG..GGTcA....TGACGTCGCCTTGACGAGGCGAAG...........GtCGCCCGTTCGAATCGGGCCGAGCCCA... chr.trna19-ValGAC Sc: 69.45 >..>>>.....>>..............<<...>>>>>.......<<<<<................>>>>>.......<<<<<.<<<..<.... GCTCTCCTCCCTCCATTt.........GAACGTCGCCTTGACGAGGCGAAG...........GtCCCCGGTTCGAATCCGGGCGAGCCCA... chr.trna20-ValGAC Sc: 27.36 >>>>>>>..>>>................<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTCGTGGTCTAGT..GGTtA....TGACGCCTGCCTCACACGCAGGAG...........GtCCCCGGTTCGAATCCGGGCGAGCCCA... chr.trna44-ValCAC Sc: 80.34 >>>>>>>..>>>................<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTCGTGGTCTAGC..GGTtA....TGACGTCGCCCTTACAAGGCGGAG...........AtCGCCGGTTCGAATCCGGCCGAGCCCA... chr.trna30-ValTAC Sc: 81.00

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.