tRNAscan-SE Analysis of the Aquifex aeolicus Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna21 (1515511-1515436)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (1515478-1515476)	Score: 81.74
Seq: GGGGCGGTAGCTCAGCTGGGAGAGCGCCGATATGGCATGTCGGAGGtCGGGGGTTCGAGTCCCCTCCGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna12 (1193850-1193922)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (1193883-1193885)	Score: 91.24
Seq: GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAGGtCGTGGGTTCGAGTCCCACCACCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna40 (571004-570932)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (570971-570969)	Score: 91.24
Seq: GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAGGtCGTGGGTTCGAGTCCCACCACCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (1243010-1242934)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (1242976-1242974)	Score: 83.01
Seq: CGGGCTGTAGCTCAACTGGAtAGAGCGCGGGACTACGGATCCCGAGGtTGCGGGTTCGACTCCCGCCAGCCCGGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna37 (619987-619914)	Length: 74 bp
Type: Arg	Anticodon: CCG at 35-37 (619953-619951)	Score: 76.95
Seq: GTGCCCGTAGCTCAGGTGGAcAGAGCACGGGGCTCCGGACCCCGGGGtCGCGGGTTCAAGTCCCGCCGGGCACA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna42 (444000-443924)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (443966-443964)	Score: 88.49
Seq: GTGCCCGTAGCTCAGGCGGAtAGAGCGCGAGATTCCTAATCTCGAGGtCGCGGGTTCGAGTCCCGCCGGGCACACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna13 (1197109-1197185)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (1197143-1197145)	Score: 96.14
Seq: GGGCCCGTAGCTCAGTTGGAtAGAGCAGGGGATTTCTAATCCCCAGGtCGGGGGTTCGAGTCCCTCCGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna10 (1050475-1050550)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (1050508-1050510)	Score: 84.92
Seq: TCCGGGGTAGCTCAATCGGCAGAGCGGGTGGCTGTTAACCACCTGGtTGGGGGTTCGAGTCCCTCCCCCGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna25 (1376079-1376002)	Length: 78 bp
Type: Asp	Anticodon: GTC at 36-38 (1376044-1376042)	Score: 94.08
Seq: GGAGCGGTAGTTCAGCCcGGTcAGAACGCCGGCCTGTCAAGCCGGAGGtCGCGGGTTCAAATCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (217867-217941)	Length: 75 bp
Type: Cys	Anticodon: GCA at 33-35 (217899-217901)	Score: 69.18
Seq: GGCGACGTGGCCGAGCGGTTAGGCGGGGGACTGCAAATCCCCTTTaCGGCGGTTCGAATCCGCCCGTCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (1147837-1147762)	Length: 76 bp
Type: Gln	Anticodon: TTG at 34-36 (1147804-1147802)	Score: 90.68
Seq: TGGGGCGTAGCTCAACTGGCAGAGCACCGGACTTTGGATCCGGGGGtTCCAGGTTCGAGTCCTGGCGCCCCAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna23 (1453112-1453035)	Length: 78 bp
Type: Glu	Anticodon: TTC at 37-39 (1453076-1453074)	Score: 67.98
Seq: GCCCCCGTCGTCTAGCCtGGCctAGGACGCCGGCCTTTCACGCCGGAAACGCGGGTTCAAATCCCGCCGGGGGTGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna44 (297061-296987)	Length: 75 bp
Type: Gly	Anticodon: CCC at 33-35 (297029-297027)	Score: 89.80
Seq: GCGGGCGTAGCTCAGAGGTAGAGCACCTGCTTCCCAAGCAGGAGGtCGCCGGTTCGAGTCCCGTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....

chr.trna3 (217784-217858)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (217816-217818)	Score: 94.59
Seq: GCGGGCGTAGCTCAGTGGTAGAGCGGCTGCTTGCCATGCAGCAGGtCGCGGGTTCGAGTCCCGTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna17 (1356669-1356744)	Length: 76 bp
Type: Gly	Anticodon: TCC at 34-36 (1356702-1356704)	Score: 101.69
Seq: GCGGGCGTAGCTCAGTTGGTAGAGCAGCGGCCTTCCAAGCCGCAGGtCGCGGGTTCGAGTCCCGTCGCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (1245134-1245209)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (1245167-1245169)	Score: 87.52
Seq: GAGGGTGTAGCTCAGTTGGTAGAGCGGGGGACTGTGGATCCCCGTGtCGCGGGTTCGAGTCCCGTCACCCTCCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (1193760-1193833)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (1193794-1193796)	Score: 85.73
Seq: GGGCCTCTAGCTCAGCTGGTtAGAGCGTGCCCCTGATAAGGGCAAGGtCCCAGGTTCGAGTCCTGGGAGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna39 (571094-571021)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (571060-571058)	Score: 85.73
Seq: GGGCCTCTAGCTCAGCTGGTtAGAGCGTGCCCCTGATAAGGGCAAGGtCCCAGGTTCGAGTCCTGGGAGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna34 (844230-844143)	Length: 88 bp
Type: Leu	Anticodon: CAA at 35-37 (844196-844194)	Score: 74.94
Seq: GCCGGTGTGGCGGAACTGGCaGACGCGGGGGATTCAAAATCCCCTGCCCTTCAcGGGCGTGCGGGTTCGACTCCCGCCACCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna32 (898385-898299)	Length: 87 bp
Type: Leu	Anticodon: CAG at 35-37 (898351-898349)	Score: 83.63
Seq: GCGGGTGTGGCGGAACTGGCaGACGCGCCGGACTCAGGATCCGGTGCCCGCAAGGGCGTGCGGGTTCGACTCCCGCCACCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna2 (215844-215931)	Length: 88 bp
Type: Leu	Anticodon: GAG at 35-37 (215878-215880)	Score: 65.67
Seq: GCCGGAGTGGCGGAACTGGCaGACGCGCCGTCTTGAGGGGACGGTGCCCTTTACGGGCGTGCGGGTTCGACTCCCGCCTCCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna38 (601801-601714)	Length: 88 bp
Type: Leu	Anticodon: TAA at 35-37 (601767-601765)	Score: 77.53
Seq: GGGGGTGTGGCGGAATTGGCaGACGCGGGGGACTTAAAATCCCCTGGGCGAAAaGCCCGTGAGGGTTCGACTCCCTCCACCCCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna31 (955495-955409)	Length: 87 bp
Type: Leu	Anticodon: TAG at 35-37 (955461-955459)	Score: 85.48
Seq: GCGGGTGTGGCGGAACTGGCaGACGCGCCGGACTTAGGATCCGGTGCCCGTAAGGGCGTGCGGGTTCGACTCCCGCCACCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna27 (1242908-1242833)	Length: 76 bp
Type: Lys	Anticodon: CTT at 34-36 (1242875-1242873)	Score: 85.54
Seq: GGGCTGCTAGCTCAATAGGCAGAGCGGCGGACTCTTAATCCGCAGGtTCCGGGTTCGAGTCCCGGGCAGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (1515422-1515347)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (1515389-1515387)	Score: 101.54
Seq: GAGCCGGTAGCTCAGTTGGTAGAGCAACGGCCTTTTAAGCCGTGGGtCGCGGGTTCGAGTCCCGCCCGGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna5 (403089-403165)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (403123-403125)	Score: 86.28
Seq: GGCGGCGTAGCTCAGCTGGTcAGAGCGGGGATCTCATAAGTCCCAGGtCGGAGGTTCGAGTCCTCCCGCCGCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna33 (861978-861903)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (861945-861943)	Score: 89.58
Seq: GGGCGCGTAGCTCAATTGGCAGAGCGGGCGGCTCATAACCGCCCGGtTGGGGGTTCGAGTCCTCCCGCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna8 (970381-970457)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (970415-970417)	Score: 90.83
Seq: CGCGGGGTGGAGCAGCCtGGTAGCTCGCCGGGCTCATAACCCGGAGGtCGCGGGTTCAAATCCCGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna41 (450480-450405)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (450447-450445)	Score: 88.17
Seq: GGCCCGGTAGCTCAGGTGGTAGAGCACCCGGCTGAAAACCGGGGTGtCGGCGGTTCGACTCCGCCCTGGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna29 (1174383-1174311)	Length: 73 bp
Type: Pro	Anticodon: CGG at 34-36 (1174350-1174348)	Score: 84.43
Seq: CGGGGCGTAGCGCAGGTGGTAGCGCGCTGGCTTCGGGAGCCAGAGGtCGCCGGTTCGAGTCCGGTCGCCCCGA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna6 (552612-552687)	Length: 76 bp
Type: Pro	Anticodon: GGG at 34-36 (552645-552647)	Score: 82.84
Seq: CGGGGTGTAGCGCAGGTGGTAGCGCGCTGGCATGGGGGGCCAGAGGtCGCCGGTTCGAGTCCGGTCACCCCGACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna20 (1531124-1531052)	Length: 73 bp
Type: Pro	Anticodon: TGG at 34-36 (1531091-1531089)	Score: 85.37
Seq: CGGGGCGTAGCTCAGGTGGTAGAGCGTCGGCTTTGGGAGCCGAAGGtCGCCGGTTCAAGTCCGGCCGCCCCGA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna7 (727371-727465)	Length: 95 bp
Type: SeC(p)	Anticodon: TCA at 36-38 (727406-727408)	Score: 26.88
Seq: GGGAGAGGTTGGcCGGCTGGTGCCGCCCCGGGACTTCAAATCCCGTGGGAGGTCCCgcAAGGGAGCTCCGGAGGGTTCGATTCCCTCCCTCTCCC
Str: >>>>>>>>..>>.>>>>....<<<<<<.>>>>>.......<<<<<..>>>>.>>>......<<<.<<<<.>>>>>.......<<<<<<<<<<<<<

chr.trna9 (972005-972094)	Length: 90 bp
Type: Ser	Anticodon: CGA at 35-37 (972039-972041)	Score: 61.18
Seq: GACGGGGTGGCCGAGCGGAcgAAGGCGGGGGACTCGAAATCCCTTGGCGGGTTACCaGCCCGCCCGTGGGTTCGAATCCCACCCCCGTCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna36 (643683-643592)	Length: 92 bp
Type: Ser	Anticodon: GCT at 35-37 (643649-643647)	Score: 73.05
Seq: GGAGGGGTGGCCGAGAGGCcgAAGGCGGCCGCTTGCTAAGCGGCAGAGGGGCTAAAACCCCTCCGAGGGTTCGAATCCCTCCCCCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>......<<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna1 (168875-168966)	Length: 92 bp
Type: Ser	Anticodon: GGA at 35-37 (168909-168911)	Score: 68.39
Seq: GGAAGGGTGGCCGAGCGGTcgAAGGCGCGGCGCTGGAAACGCCGTGTACCCCGTTtGGGGTACCGAGGGTTCGAATCCCTCCCCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>....<<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna28 (1231312-1231220)	Length: 93 bp
Type: Ser	Anticodon: TGA at 35-37 (1231278-1231276)	Score: 71.34
Seq: GGAGGGGTGGCCGAGCGGAcgAAGGCGGGGGATTTGAAATCCCTTGGCGGGTTACAgGCCCGCCCGTGGGTTCGAATCCCACCCCCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna43 (383386-383315)	Length: 72 bp
Type: Thr	Anticodon: CGT at 33-35 (383354-383352)	Score: 85.25
Seq: GCCGGCGTAGCTCAGCGGTAGAGCGCGGGCTTCGTAAGCCTGAGGtCGTGGGTTCGAATCCCACCGCCGGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1356774-1356849)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (1356807-1356809)	Score: 90.45
Seq: GCCCAGGTAGCTCAGTCGGTAGAGCGCACCCTTGGTAAGGGTGAGGgCGCCGGTTCGAGTCCGGTCCTGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna15 (1356480-1356552)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (1356513-1356515)	Score: 81.02
Seq: GCTGGCGTAGCTCAGTCGGCAGAGCGCGGGATTTGTAATCCCGTGGgCGCGGGTTCGAGTCCCGCCGCCAGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna19 (1358326-1358401)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (1358359-1358361)	Score: 87.12
Seq: GGGGCTGTAGCTCAATTGGCAGAGCGCGGGACTCCAAATCCCGTGGgTGGGGGTTCGAGTCCTCCCAGCCCCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna16 (1356575-1356659)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (1356609-1356611)	Score: 68.27
Seq: GGAGGGGTGGCCGAGCGGCcaAAGGCAGGGGACTGTAAATCCCCCGGGCGTCCGCCCTGCGCAGGTTCGAATCCTGCCCCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>.>>..<<.<<..>>>>>.......<<<<<<<<<<<<.

chr.trna35 (730676-730601)	Length: 76 bp
Type: Val	Anticodon: GAC at 34-36 (730643-730641)	Score: 85.10
Seq: AGGCGCGTAGCTCAGTAGGGAGAGCGCCGGCCCGACACGCCGGAGGtCGGGGGTTCAAGTCCCCCCGCGCCTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna24 (1453013-1452938)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (1452980-1452978)	Score: 98.95
Seq: AGGCGGGTAGCTCAGTTGGGAGAGCGCCGCCCTTACAAGGCGGAGGtCGCGGGTTCGAGTCCCGCCCCGCCTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.