tRNAscan-SE Analysis of the Aquifex aeolicus Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	21	1515511	1515436	View	Ala	GGC	0	0	81.74	66.52	15.22	Both

chr	12	1193850	1193922	View	Ala	TGC	0	0	91.24	75.29	15.95	Both
chr	40	571004	570932	View	Ala	TGC	0	0	91.24	75.29	15.95	Both

chr	26	1243010	1242934	View	Arg	ACG	0	0	83.01	60.94	22.07	Both

chr	37	619987	619914	View	Arg	CCG	0	0	76.95	52.45	24.50	Both

chr	42	444000	443924	View	Arg	CCT	0	0	88.49	63.87	24.62	Both

chr	13	1197109	1197185	View	Arg	TCT	0	0	96.14	74.77	21.37	Both

chr	10	1050475	1050550	View	Asn	GTT	0	0	84.92	59.00	25.92	Both

chr	25	1376079	1376002	View	Asp	GTC	0	0	94.08	75.47	18.61	Both

chr	4	217867	217941	View	Cys	GCA	0	0	69.18	42.14	27.04	Both

chr	30	1147837	1147762	View	Gln	TTG	0	0	90.68	67.20	23.48	Both

chr	23	1453112	1453035	View	Glu	TTC	0	0	67.98	47.02	20.96	Both

chr	44	297061	296987	View	Gly	CCC	0	0	89.80	79.22	10.58	Both

chr	3	217784	217858	View	Gly	GCC	0	0	94.59	76.20	18.39	Both

chr	17	1356669	1356744	View	Gly	TCC	0	0	101.69	83.26	18.43	Both

chr	14	1245134	1245209	View	His	GTG	0	0	87.52	63.30	24.22	Both

chr	11	1193760	1193833	View	Ile	GAT	0	0	85.73	54.81	30.92	Both
chr	39	571094	571021	View	Ile	GAT	0	0	85.73	54.81	30.92	Both

chr	34	844230	844143	View	Leu	CAA	0	0	74.94	47.57	27.37	Both

chr	32	898385	898299	View	Leu	CAG	0	0	83.63	58.61	25.02	Both

chr	2	215844	215931	View	Leu	GAG	0	0	65.67	36.05	29.62	Both

chr	38	601801	601714	View	Leu	TAA	0	0	77.53	46.84	30.69	Both

chr	31	955495	955409	View	Leu	TAG	0	0	85.48	60.46	25.02	Both

chr	27	1242908	1242833	View	Lys	CTT	0	0	85.54	56.36	29.18	Both

chr	22	1515422	1515347	View	Lys	TTT	0	0	101.54	79.42	22.12	Both

chr	5	403089	403165	View	Met	CAT	0	0	86.28	62.88	23.40	Both
chr	33	861978	861903	View	Met	CAT	0	0	89.58	68.06	21.52	Both
chr	8	970381	970457	View	Met	CAT	0	0	90.83	66.57	24.26	Both

chr	41	450480	450405	View	Phe	GAA	0	0	88.17	73.48	14.69	Both

chr	29	1174383	1174311	View	Pro	CGG	0	0	84.43	62.85	21.58	Both

chr	6	552612	552687	View	Pro	GGG	0	0	82.84	61.34	21.50	Both

chr	20	1531124	1531052	View	Pro	TGG	0	0	85.37	64.05	21.32	Both

chr	7	727371	727465	View	SeC(p)	TCA	0	0	26.88	0.00	0.00	Both

chr	9	972005	972094	View	Ser	CGA	0	0	61.18	31.61	29.57	Both

chr	36	643683	643592	View	Ser	GCT	0	0	73.05	42.50	30.55	Both

chr	1	168875	168966	View	Ser	GGA	0	0	68.39	32.10	36.29	Both

chr	28	1231312	1231220	View	Ser	TGA	0	0	71.34	44.86	26.48	Both

chr	43	383386	383315	View	Thr	CGT	0	0	85.25	66.60	18.65	Both

chr	18	1356774	1356849	View	Thr	GGT	0	0	90.45	67.57	22.88	Both

chr	15	1356480	1356552	View	Thr	TGT	0	0	81.02	58.73	22.29	Both

chr	19	1358326	1358401	View	Trp	CCA	0	0	87.12	69.83	17.29	Both

chr	16	1356575	1356659	View	Tyr	GTA	0	0	68.27	35.03	33.24	Both

chr	35	730676	730601	View	Val	GAC	0	0	85.10	64.64	20.46	Both

chr	24	1453013	1452938	View	Val	TAC	0	0	98.95	77.10	21.85	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.