tRNAscan-SE Analysis of the Aquifex aeolicus Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCGGTAGCTCAGCTGGGAGAGCGCCGATATGGCATGTCGGAG...........GtCGGGGGTTCGAGTCCCCTCCGCTCCACCA chr.trna21-AlaGGC Sc: 81.74  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAG...........GtCGTGGGTTCGAGTCCCACCACCTCCA... chr.trna40-AlaTGC Sc: 91.24  
GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAG...........GtCGTGGGTTCGAGTCCCACCACCTCCA... chr.trna12-AlaTGC Sc: 91.24  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGCTGTAGCTCAACTGGAtAGAGCGCGGGACTACGGATCCCGAG...........GtTGCGGGTTCGACTCCCGCCAGCCCGGCCA chr.trna26-ArgACG Sc: 83.01  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGCCCGTAGCTCAGGTGGAcAGAGCACGGGGCTCCGGACCCCGGG...........GtCGCGGGTTCAAGTCCCGCCGGGCACA... chr.trna37-ArgCCG Sc: 76.95  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGCCCGTAGCTCAGGCGGAtAGAGCGCGAGATTCCTAATCTCGAG...........GtCGCGGGTTCGAGTCCCGCCGGGCACACCA chr.trna42-ArgCCT Sc: 88.49  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGTTGGAtAGAGCAGGGGATTTCTAATCCCCAG...........GtCGGGGGTTCGAGTCCCTCCGGGCCCACCA chr.trna13-ArgTCT Sc: 96.14  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCGGGGTAGCTCAATCGGCAGAGCGGGTGGCTGTTAACCACCTG...........GtTGGGGGTTCGAGTCCCTCCCCCGGAGCCA chr.trna10-AsnGTT Sc: 84.92  



Asp tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGCGGTAGTTCAGCCcGGTcAGAACGCCGGCCTGTCAAGCCGGAG...........GtCGCGGGTTCAAATCCCGTCCGCTCCGCCA chr.trna25-AspGTC Sc: 94.08  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGACGTGGCCGAGCGGTT.AGGCGGGGGACTGCAAATCCCCTT...........TaCGGCGGTTCGAATCCGCCCGTCGCCTCCA chr.trna4-CysGCA Sc: 69.18  



Gln tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGCGTAGCTCAACTGGCAGAGCACCGGACTTTGGATCCGGGG...........GtTCCAGGTTCGAGTCCTGGCGCCCCAGCCA chr.trna30-GlnTTG Sc: 90.68  



Glu tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCCCCGTCGTCTAGCCtGGCctAGGACGCCGGCCTTTCACGCCGGAA...........ACGCGGGTTCAAATCCCGCCGGGGGTGCCA chr.trna23-GluTTC Sc: 67.98  



Gly tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGCGTAGCTCAGT.GGTA.GAGCGGCTGCTTGCCATGCAGCAG...........GtCGCGGGTTCGAGTCCCGTCGCCCGCTCCA chr.trna3-GlyGCC Sc: 94.59  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<....
GCGGGCGTAGCTCAGA.GGTA.GAGCACCTGCTTCCCAAGCAGGAG...........GtCGCCGGTTCGAGTCCCGTCGCCCGCTCCA chr.trna44-GlyCCC Sc: 89.80  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGCGTAGCTCAGTTGGTA.GAGCAGCGGCCTTCCAAGCCGCAG...........GtCGCGGGTTCGAGTCCCGTCGCCCGCTCCA chr.trna17-GlyTCC Sc: 101.69  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GAGGGTGTAGCTCAGTTGGTAGAGCGGGGGACTGTGGATCCCCGT...........GtCGCGGGTTCGAGTCCCGTCACCCTCCCCA chr.trna14-HisGTG Sc: 87.52  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTCTAGCTCAGCTGGTtAGAGCGTGCCCCTGATAAGGGCAAG...........GtCCCAGGTTCGAGTCCTGGGAGGCCCA... chr.trna39-IleGAT Sc: 85.73  
GGGCCTCTAGCTCAGCTGGTtAGAGCGTGCCCCTGATAAGGGCAAG...........GtCCCAGGTTCGAGTCCTGGGAGGCCCA... chr.trna11-IleGAT Sc: 85.73  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGAGTGGCGGAACTGGCaGACGCGCCGTCTTGAGGGGACGGTGCCCTTTA....CGGGCGTGCGGGTTCGACTCCCGC.CTCCGGCACCA chr.trna2-LeuGAG Sc: 65.67  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTGGCGGAACTGGCaGACGCGCCGGACTCAGGATCCGGTGCCC.GCAA....GGGCGTGCGGGTTCGACTCCCGC.CACCCGCACCA chr.trna32-LeuCAG Sc: 83.63  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTGGCGGAACTGGCaGACGCGCCGGACTTAGGATCCGGTGCCC.GTAA....GGGCGTGCGGGTTCGACTCCCGC.CACCCGCACCA chr.trna31-LeuTAG Sc: 85.48  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGTGTGGCGGAACTGGCaGACGCGGGGGATTCAAAATCCCCTGCCC.TTCAc...GGGCGTGCGGGTTCGACTCCCGC.CACCGGCACCA chr.trna34-LeuCAA Sc: 74.94  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.........<<<<..>>>>>.......<<<<<.<<<<<<<....
GGGGGTGTGGCGGAATTGGCaGACGCGGGGGACTTAAAATCCCCTGGGC.GAAAa...GCCCGTGAGGGTTCGACTCCCTC.CACCCCCACCA chr.trna38-LeuTAA Sc: 77.53  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTGCTAGCTCAATAGGCAGAGCGGCGGACTCTTAATCCGCAG...........GtTCCGGGTTCGAGTCCCGGGCAGCCCACCA chr.trna27-LysCTT Sc: 85.54  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GAGCCGGTAGCTCAGTTGGTAGAGCAACGGCCTTTTAAGCCGTGG...........GtCGCGGGTTCGAGTCCCGCCCGGCTCACCA chr.trna22-LysTTT Sc: 101.54  



Met tRNAs


.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCCtGGT.AGCTCGCCGGGCTCATAACCCGGAG...........GtCGCGGGTTCAAATCCCGCCCCCGCAACCA chr.trna8-MetCAT Sc: 90.83  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGCGTAGCTCAATT.GGC.AGAGCGGGCGGCTCATAACCGCCCG...........GtTGGGGGTTCGAGTCCTCCCGCGCCCACCA chr.trna33-MetCAT Sc: 89.58  
GGCGGCGTAGCTCAGCT.GGTcAGAGCGGGGATCTCATAAGTCCCAG...........GtCGGAGGTTCGAGTCCTCCCGCCGCCACCA chr.trna5-MetCAT Sc: 86.28  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCCGGTAGCTCAGGTGGTAGAGCACCCGGCTGAAAACCGGGGT...........GtCGGCGGTTCGACTCCGCCCTGGGCCACCA chr.trna41-PheGAA Sc: 88.17  



Pro tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTGTAGCGCAGGTGGTAGCGCGCTGGCATGGGGGGCCAGAG...........GtCGCCGGTTCGAGTCCGGTCACCCCGACCA chr.trna6-ProGGG Sc: 82.84  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTAGCGCAGGTGGTAGCGCGCTGGCTTCGGGAGCCAGAG...........GtCGCCGGTTCGAGTCCGGTCGCCCCGA... chr.trna29-ProCGG Sc: 84.43  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTAGCTCAGGTGGTAGAGCGTCGGCTTTGGGAGCCGAAG...........GtCGCCGGTTCAAGTCCGGCCGCCCCGA... chr.trna20-ProTGG Sc: 85.37  



SeC tRNAs


.>>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>.>>>>....<<<<.<<...>>>>>.......<<<<<<<<<<<<....
gGGAGAGGTTGGCCGGCTGGTgCCGCCCCGGGACTTCAAATCCCGTGggAGGTCCCGCAAGGGAGCTCcGGAGGGTTCGATTCCCTCCCTCTCCC... chr.trna7-SeC(p)TCA Sc: 26.88  



Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>>.....<<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAAGGGTGGCCGAGCGGTcgA.AGGCGCGGCGCTGGAAACGCCGT.GTACCCCGTT.tGGGGTAC.CGAGGGTTCGAATCCCTC..CCCTTCCGCCA chr.trna1-SerGGA Sc: 68.39  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>>.....<<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GACGGGGTGGCCGAGCGGAcgA.AGGCGGGGGACTCGAAATCCCTT.GGCGGGTTACCaGCCCGCC.CGTGGGTTCGAATCCCAC..CCCCGTCG... chr.trna9-SerCGA Sc: 61.18  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>>.....<<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGGGGTGGCCGAGCGGAcgA.AGGCGGGGGATTTGAAATCCCTT.GGCGGGTTACAgGCCCGCC.CGTGGGTTCGAATCCCAC..CCCCTCCGCCA chr.trna28-SerTGA Sc: 71.34  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>.........<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGGGGTGGCCGAGAGGCcgA.AGGCGGCCGCTTGCTAAGCGGCAGAGGGGC.TAAA..ACCCCTCCGAGGGTTCGAATCCCTC..CCCCTCCGCCA chr.trna36-SerGCT Sc: 73.05  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCAGGTAGCTCAGTCGGTA.GAGCGCACCCTTGGTAAGGGTGAG...........GgCGCCGGTTCGAGTCCGGTCCTGGGCTCCA chr.trna18-ThrGGT Sc: 90.45  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGCGTAGCTCAGC.GGTA.GAGCGCGGGCTTCGTAAGCCTGAG...........GtCGTGGGTTCGAATCCCACCGCCGGCT... chr.trna43-ThrCGT Sc: 85.25  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGCGTAGCTCAGTCGGCA.GAGCGCGGGATTTGTAATCCCGTG...........GgCGCGGGTTCGAGTCCCGCCGCCAGCT... chr.trna15-ThrTGT Sc: 81.02  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTGTAGCTCAATTGGCAGAGCGCGGGACTCCAAATCCCGTG...........GgTGGGGGTTCGAGTCCTCCCAGCCCCGCCA chr.trna19-TrpCCA Sc: 87.12  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>.>>.......<<.<<..>>>>>.......<<<<<<<<<<<<....
GGAGGGGTGGCCGAGCGGCcaA.AGGCAGGGGACTGTAAATCCCCCGGGCGTC.....CGCCCTGCGCAGGTTCGAATCCTGCCCCCTCCA... chr.trna16-TyrGTA Sc: 68.27  



Val tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCGCGTAGCTCAGTAGGGAGAGCGCCGGCCCGACACGCCGGAG...........GtCGGGGGTTCAAGTCCCCCCGCGCCTACCA chr.trna35-ValGAC Sc: 85.10  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCGGGTAGCTCAGTTGGGAGAGCGCCGCCCTTACAAGGCGGAG...........GtCGCGGGTTCGAGTCCCGCCCCGCCTACCA chr.trna24-ValTAC Sc: 98.95

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.