tRNAscan-SE Analysis of the Anaplasma marginale St Maries Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

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chr.trna37 (61373-61301)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (61340-61338)	Score: 82.60
Seq: GGGGGCATAGCTCAGTTGGTAGAGCATCTGTTTTGCACACAGAAGGtCAGCGGTTCGACCCCGCTTGCCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna33 (473149-473076)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (473115-473113)	Score: 70.17
Seq: GCGCCCTTAGCTCAGATGGAtAGAGCATTTGACTACGGATCAAAAGGtCGGGCGTTCGAGTCGTCCAGGGCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna28 (754966-754892)	Length: 75 bp
Type: Arg	Anticodon: CCG at 36-38 (754931-754929)	Score: 70.83
Seq: GCATTCGTAGCTCAGTCaGGAtAGAGCGCTACCCTCCGGAGGTAGAGGtCGCAGGTTCGAGTCCTGCCGAGTGCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna36 (229575-229502)	Length: 74 bp
Type: Arg	Anticodon: CCT at 35-37 (229541-229539)	Score: 70.84
Seq: GGGGCCGTAGCTCAGTAGGAtAGAGCATTAGATTCCTAATCTGAGGGtCGTGCGTTCGAATCGCACCGGTCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1137941-1138018)	Length: 78 bp
Type: Arg	Anticodon: TCT at 36-38 (1137976-1137978)	Score: 84.47
Seq: GTGTCCGTAGCTCAGCTGGAcaAGAGCAGCAGCCTTCTAAGCTGCGGGtCAGGGGTTCGAGTCCCTTCGGGCACACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna35 (459976-459905)	Length: 72 bp
Type: Asn	Anticodon: GTT at 33-35 (459944-459942)	Score: 74.72
Seq: TCCCTGGTAGCTCAGTGGCAGAGCAGCTGGCTGTTAACCAGTGTGtCGTTGGTTCGAATCCAACCCGGGGAG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna12 (388354-388427)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (388388-388390)	Score: 80.64
Seq: GGGGGTGTAGCTCAGTTGGTtAGAGCGCAAGCCTGTCACGTTTGAGGtCGCGAGTTCAAGTCTCGTCACTCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna17 (1067571-1067642)	Length: 72 bp
Type: Cys	Anticodon: GCA at 34-36 (1067604-1067606)	Score: 51.84
Seq: GGCTGGGTGGCAGAATGGTtTATGCAGAGGACTGCAAATCCTTTTATATCGGTTCGATTCCGGTCCCGGCCT
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna22 (1139929-1139858)	Length: 72 bp
Type: Gln	Anticodon: TTG at 33-35 (1139897-1139895)	Score: 64.04
Seq: TGGGATGTAGCCAAGCGGTAAGGCAGCGGTTTTTGGTACCGTCATtCGGAGGTTCGATCCCTCCCATCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna27 (794988-794916)	Length: 73 bp
Type: Glu	Anticodon: TTC at 35-37 (794954-794952)	Score: 46.43
Seq: GACTCCTTCGTCTAGTGGTctAGGACCCCACCCTTTCACGGTGGTAACGCGGGTTCGACTCCCGTGGGAGTCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna11 (339934-340005)	Length: 72 bp
Type: Gly	Anticodon: CCC at 33-35 (339966-339968)	Score: 70.90
Seq: GCGGGAGTAGCTCAGTGGTAGAGTACGACCTTCCCAAGGTTGGGGcCGAGGGTTCGATCCCCTTCTCCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (339807-339878)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (339839-339841)	Score: 72.62
Seq: GCGGGAGTAGCTCAGTGGTAGAGTATAACCTTGCCAAGGTTAGGGcCGAGGGTTCGATCCCCTTCTCCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (833489-833419)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (833457-833455)	Score: 70.49
Seq: GCGGGTATAACTCAGTGGTAGAGTAGCAGCCTTCCAAGCTGCCCGCGTGGGTTCGATTCCCATTACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (30979-31051)	Length: 73 bp
Type: His	Anticodon: GTG at 34-36 (31012-31014)	Score: 68.45
Seq: GCGGGCGTAGCTCAGTCGGTAGAGCATCAGTTTGTGGCACTGGAGGtCGCCAGTTCGATCCTGGTCGCTCGCC
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna31 (542569-542494)	Length: 76 bp
Type: Ile	Anticodon: GAT at 34-36 (542536-542534)	Score: 77.66
Seq: GGGTCTGTAGCTCAGCGGTtGGAGCGCACGCCTGATAAGCGTGAGGaCGGAAGTTCGATTCTTCCCAGGCCCACCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (605676-605594)	Length: 83 bp
Type: Leu	Anticodon: CAA at 34-36 (605643-605641)	Score: 62.69
Seq: GCCCTTATGGCGGAATGGTaGACGCGGTAGACTCAAAATCTACTGCCCGTGAGGGTGTGCTGGTTCGAGTCCGGCTAAGGGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1192741-1192658)	Length: 84 bp
Type: Leu	Anticodon: CAG at 35-37 (1192707-1192705)	Score: 59.45
Seq: GTCCGAATGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGCTAGTGGCCTTACGGTCGTGGAAGTTCGAGTCTTCTTTCGGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna21 (1162651-1162563)	Length: 89 bp
Type: Leu	Anticodon: GAG at 35-37 (1162617-1162615)	Score: 60.32
Seq: GCGGTTGTGGTGGAAATGGTaGACACGCAGCGTTGAGGTCGCTGTGGCTATAACAGGCCtTGGAAGTTCGAGTCTTCTTAACCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>......<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna6 (256088-256173)	Length: 86 bp
Type: Leu	Anticodon: TAA at 34-36 (256121-256123)	Score: 70.41
Seq: GTCCATGTGGCGGAATGGTaGACGCTGCGGACTTAAAATCCGCTGACCTTGCGGTCGTGGGAGTTCGAGTCTCCCCATGGGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna8 (259675-259757)	Length: 83 bp
Type: Leu	Anticodon: TAG at 35-37 (259709-259711)	Score: 69.37
Seq: GCGGATATGGCGGAATTGGTaGACGCGCTAGGTTTAGGTCCTAGTGGGCCCGGCCCGTGGGGGTTCAAGTCCCTCTATCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>.>><<.<<..>>>>>.......<<<<<<<<<<<<.

chr.trna7 (259472-259543)	Length: 72 bp
Type: Lys	Anticodon: CTT at 33-35 (259504-259506)	Score: 75.27
Seq: GGTTCCGTAGCTCAGCGGTAGAGCACCTGACTCTTAATCAGTGTGtCGCGTGTTCGAATCACGCCGGAACCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.

chr.trna23 (1073823-1073752)	Length: 72 bp
Type: Lys	Anticodon: TTT at 33-35 (1073791-1073789)	Score: 63.81
Seq: GGTCCTGTAGCTCAGTGGTAGAGCAGGTGGCTTTTAATCACCGTGcCGCGCGTTCGATCCGCGCCGGGACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna32 (537091-537017)	Length: 75 bp
Type: Met	Anticodon: CAT at 33-35 (537059-537057)	Score: 64.06
Seq: GGCTAGGTAGCTCAGGGGTAGAGCAGGAGCATCATAATCTCCGGGtCGGGGGTTCGAATCCCTCCTTAGCCACAA
Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna19 (1183118-1183194)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1183152-1183154)	Score: 79.19
Seq: CGCGGGGTGGAGCAGTTGGTtAGCTCGGCAGGCTCATAACCTGCAGGtCGATGGTTCGAGTCCGTCCCCCGCAACCT
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna9 (265796-265868)	Length: 73 bp
Type: Met	Anticodon: CAT at 34-36 (265829-265831)	Score: 80.89
Seq: GGGGCTGTAGCTCAGGGGTtAGAGCAGCTCGCTCATAACGAGTTGGcCGCAGGTTCAAATCCTGCCAGCCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna34 (463487-463417)	Length: 71 bp
Type: Phe	Anticodon: GAA at 33-35 (463455-463453)	Score: 71.16
Seq: GGCTTGGTAGCTCAGTGGTAGAGCGGAGGACTGAAAATCCTTGCGCGCTGGTTCAATTCCAGCCCAGGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna1 (4916-4993)	Length: 78 bp
Type: Pro	Anticodon: GGG at 36-38 (4951-4953)	Score: 72.69
Seq: CGGAATGTAGCGCAGCCaGGTtAGCGCGTCAGTCTGGGGGACTGGAGGtCGTGGGTTCGAATCCCGCCATTCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna29 (607535-607462)	Length: 74 bp
Type: Pro	Anticodon: TGG at 35-37 (607501-607499)	Score: 73.10
Seq: CGGGGTGTGGCGCAGCCtGGTAGCGCACTTGGTTTGGGGCCAAGGGGtCGGGAGTTCGAATCTCTCCACCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (516769-516860)	Length: 92 bp
Type: Ser	Anticodon: GCT at 35-37 (516803-516805)	Score: 64.66
Seq: GGAGAGGTGGCCGAGAGGCtgAAGGCGGCGGTTTGCTAAACCGTTATACAAGTAAcATTGTATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna16 (1009196-1009280)	Length: 85 bp
Type: Ser	Anticodon: GGA at 35-37 (1009230-1009232)	Score: 65.16
Seq: GGAGAGATGGCTGAGCGGTcgAAAGCGCACGCTTGGAGAGCGTGTACACAGCAATGTGtCGGGGGTTCGAATCCCCCTCTTTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..><..<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna2 (6822-6908)	Length: 87 bp
Type: Ser	Anticodon: TGA at 35-37 (6856-6858)	Score: 62.12
Seq: GGACGGATGGCCGAGCGGTtgAAGGCACCAGTCTTGAAAACTGACGTACGTTAGCGCGTACCGTGGGTTCGAATCCCACTCCGTCCG
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna15 (705062-705135)	Length: 74 bp
Type: Thr	Anticodon: GGT at 33-35 (705094-705096)	Score: 61.16
Seq: GCCGTTATAGTTTAGTGGTAAAACGCGTCCTTGGTAAGGACGAGcCTCAAGTTCGATTCTTGGTAACGGCACCC
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (518359-518432)	Length: 74 bp
Type: Thr	Anticodon: TGT at 35-37 (518393-518395)	Score: 75.00
Seq: GCCGGCTTAGCTTtAATTGGTAGAGCACCTGACTTGTAATCAGGGGGtTGTCGGTTCGAGTCCGGCAGCCGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna5 (212711-212784)	Length: 74 bp
Type: Trp	Anticodon: CCA at 33-35 (212743-212745)	Score: 72.89
Seq: GGGAGCGTAGCTCAACGGTAGAGCATCAGTCTCCAAAACTGAGGATATGGGTTCGATTCCTGTCGCTCCTGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna25 (833580-833498)	Length: 83 bp
Type: Tyr	Anticodon: GTA at 35-37 (833546-833544)	Score: 56.86
Seq: GGAGGGGTGGCCGAGTGGTcaAAGGCAGCAGACTGTAAATCTGCCCACTTATGTGTaCGTAGGTTCAAATCCTACCTCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna24 (1017120-1017048)	Length: 73 bp
Type: Val	Anticodon: GAC at 34-36 (1017087-1017085)	Score: 74.39
Seq: GGGTGATTAGCTCAGGTGGTAGAGCGTTTGCTTGACGTGCAAGAGGtCACTGGTTCGAGTCCAGTATTACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna4 (153914-153989)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (153947-153949)	Score: 89.40
Seq: GGGCGGTTAGCTCAGTTGGTAGAGCGCCTCGTTTACACCGAGGAAGtCAGCAGTTCGAGTCTGTTACTGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.