tRNAscan-SE Analysis of the Anaplasma marginale St Maries Genome

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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	37	61373	61301	View	Ala	TGC	0	0	82.60	62.02	20.58	Both

chr	33	473149	473076	View	Arg	ACG	0	0	70.17	44.03	26.14	Both

chr	28	754966	754892	View	Arg	CCG	0	0	70.83	47.88	22.95	Both

chr	36	229575	229502	View	Arg	CCT	0	0	70.84	50.40	20.44	Both

chr	18	1137941	1138018	View	Arg	TCT	0	0	84.47	63.47	21.00	Both

chr	35	459976	459905	View	Asn	GTT	0	0	74.72	50.56	24.16	Both

chr	12	388354	388427	View	Asp	GTC	0	0	80.64	62.74	17.90	Both

chr	17	1067571	1067642	View	Cys	GCA	0	0	51.84	29.42	22.42	Both

chr	22	1139929	1139858	View	Gln	TTG	0	0	64.04	37.77	26.27	Both

chr	27	794988	794916	View	Glu	TTC	0	0	46.43	20.83	25.60	Both

chr	11	339934	340005	View	Gly	CCC	0	0	70.90	51.46	19.44	Both

chr	10	339807	339878	View	Gly	GCC	0	0	72.62	50.09	22.53	Both

chr	26	833489	833419	View	Gly	TCC	0	0	70.49	45.10	25.39	Both

chr	3	30979	31051	View	His	GTG	0	0	68.45	50.84	17.61	Both

chr	31	542569	542494	View	Ile	GAT	0	0	77.66	57.20	20.46	Both

chr	30	605676	605594	View	Leu	CAA	0	0	62.69	32.53	30.16	Both

chr	20	1192741	1192658	View	Leu	CAG	0	0	59.45	31.29	28.16	Both

chr	21	1162651	1162563	View	Leu	GAG	0	0	60.32	30.50	29.82	Both

chr	6	256088	256173	View	Leu	TAA	0	0	70.41	37.33	33.08	Both

chr	8	259675	259757	View	Leu	TAG	0	0	69.37	38.87	30.50	Both

chr	7	259472	259543	View	Lys	CTT	0	0	75.27	51.36	23.91	Both

chr	23	1073823	1073752	View	Lys	TTT	0	0	63.81	39.99	23.82	Both

chr	32	537091	537017	View	Met	CAT	0	0	64.06	51.64	12.42	Both
chr	19	1183118	1183194	View	Met	CAT	0	0	79.19	53.83	25.36	Both
chr	9	265796	265868	View	Met	CAT	0	0	80.89	61.54	19.35	Both

chr	34	463487	463417	View	Phe	GAA	0	0	71.16	49.92	21.24	Both

chr	1	4916	4993	View	Pro	GGG	0	0	72.69	51.00	21.69	Both

chr	29	607535	607462	View	Pro	TGG	0	0	73.10	48.62	24.48	Both

chr	13	516769	516860	View	Ser	GCT	0	0	64.66	38.86	25.80	Both

chr	16	1009196	1009280	View	Ser	GGA	0	0	65.16	37.95	27.21	Both

chr	2	6822	6908	View	Ser	TGA	0	0	62.12	37.32	24.80	Both

chr	15	705062	705135	View	Thr	GGT	0	0	61.16	30.50	30.66	Both

chr	14	518359	518432	View	Thr	TGT	0	0	75.00	58.10	16.90	Both

chr	5	212711	212784	View	Trp	CCA	0	0	72.89	53.95	18.94	Both

chr	25	833580	833498	View	Tyr	GTA	0	0	56.86	31.80	25.06	Both

chr	24	1017120	1017048	View	Val	GAC	0	0	74.39	57.98	16.41	Both

chr	4	153914	153989	View	Val	TAC	0	0	89.40	68.71	20.69	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.