tRNAscan-SE Analysis of the Agrobacterium tumefaciens C58 UWash Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chrlinear	9	1221177	1221102	View	Ala	GGC	0	0	86.51	68.27	18.24	Both

chrcircular	2	58688	58763	View	Ala	TGC	0	0	95.66	79.36	16.30	Both
chrcircular	22	2516592	2516517	View	Ala	TGC	0	0	95.66	79.36	16.30	Both
chrlinear	4	1043752	1043827	View	Ala	TGC	0	0	95.66	79.36	16.30	Both
chrlinear	7	1306235	1306310	View	Ala	TGC	0	0	95.66	79.36	16.30	Both

chrcircular	4	382706	382782	View	Arg	ACG	0	0	89.63	67.47	22.16	Both

chrcircular	19	2330046	2330122	View	Arg	CCG	0	0	86.49	64.25	22.24	Both

chrcircular	18	1792320	1792396	View	Arg	TCT	0	0	93.45	73.89	19.56	Both

chrcircular	36	1217105	1217031	View	Asn	GTT	0	0	85.96	64.73	21.23	Both

chrcircular	13	1255618	1255694	View	Asp	GTC	0	0	90.74	76.71	14.03	Both
chrcircular	12	1255500	1255576	View	Asp	GTC	0	0	92.83	78.81	14.02	Both

chrcircular	30	1711064	1710991	View	Cys	GCA	0	0	70.77	42.90	27.87	Both

chrlinear	10	1118616	1118543	View	Gln	CTG	0	0	72.58	45.05	27.53	Both

chrcircular	9	809486	809560	View	Gln	TTG	0	0	73.94	45.45	28.49	Both

chrcircular	14	1567173	1567247	View	Glu	TTC	0	0	52.80	28.31	24.49	Eufind
chrcircular	15	1567700	1567774	View	Glu	TTC	0	0	52.80	28.31	24.49	Eufind

chrcircular	5	430676	430749	View	Gly	CCC	0	0	80.72	64.79	15.93	Both

chrcircular	20	2446476	2446550	View	Gly	GCC	0	0	87.04	68.54	18.50	Both
chrlinear	2	779527	779601	View	Gly	GCC	0	0	87.04	68.54	18.50	Both

chrcircular	27	1956756	1956683	View	Gly	TCC	0	0	83.28	66.52	16.76	Both

chrcircular	8	606854	606930	View	His	GTG	0	0	83.76	59.97	23.79	Both

chrcircular	1	58553	58629	View	Ile	GAT	0	0	99.89	75.64	24.25	Both
chrcircular	21	2516727	2516651	View	Ile	GAT	0	0	99.89	75.64	24.25	Both
chrlinear	3	1043617	1043693	View	Ile	GAT	0	0	99.89	75.64	24.25	Both
chrlinear	6	1306100	1306176	View	Ile	GAT	0	0	99.89	75.64	24.25	Both

chrlinear	1	576107	576191	View	Leu	CAA	0	0	72.97	49.45	23.52	Both

chrcircular	39	230917	230831	View	Leu	CAG	0	0	77.25	48.84	28.41	Both

chrcircular	32	1543362	1543278	View	Leu	GAG	0	0	70.40	35.25	35.15	Both

chrcircular	37	1184739	1184656	View	Leu	TAA	0	0	72.37	50.21	22.16	Both

chrcircular	31	1652413	1652331	View	Leu	TAG	0	0	70.05	41.32	28.73	Both

chrcircular	16	1623522	1623597	View	Lys	CTT	0	0	97.03	73.37	23.66	Both

chrcircular	17	1784212	1784287	View	Lys	TTT	0	0	92.90	64.93	27.97	Both

chrcircular	23	2512316	2512240	View	Met	CAT	0	0	81.76	54.87	26.89	Both
chrcircular	3	62964	63040	View	Met	CAT	0	0	81.76	54.87	26.89	Both
chrlinear	5	1048028	1048104	View	Met	CAT	0	0	81.76	54.87	26.89	Both
chrlinear	8	1310422	1310498	View	Met	CAT	0	0	81.76	54.87	26.89	Both
chrcircular	24	2128475	2128400	View	Met	CAT	0	0	82.10	61.49	20.61	Both
chrlinear	13	780880	780804	View	Met	CAT	0	0	83.79	68.88	14.91	Both

chrcircular	6	496312	496387	View	Phe	GAA	0	0	92.15	72.64	19.51	Both

chrcircular	10	813139	813215	View	Pro	CGG	0	0	85.78	57.35	28.43	Both

chrcircular	35	1221105	1221029	View	Pro	GGG	0	0	81.90	58.98	22.92	Both

chrcircular	29	1791702	1791626	View	Pro	TGG	0	0	86.97	59.81	27.16	Both

chrlinear	12	948260	948171	View	Ser	CGA	0	0	74.37	43.21	31.16	Both

chrcircular	11	1010919	1011009	View	Ser	GCT	0	0	73.86	48.05	25.81	Both

chrcircular	40	128502	128413	View	Ser	GGA	0	0	82.03	52.23	29.80	Both

chrcircular	33	1491834	1491745	View	Ser	TGA	0	0	70.89	35.77	35.12	Both

chrcircular	38	411150	411075	View	Thr	CGT	0	0	91.69	60.54	31.15	Both

chrcircular	7	531671	531745	View	Thr	GGT	0	0	84.06	57.12	26.94	Both

chrcircular	25	1970102	1970027	View	Thr	TGT	0	0	90.75	75.42	15.33	Both

chrcircular	28	1935128	1935053	View	Trp	CCA	0	0	85.38	59.18	26.20	Both

chrcircular	26	1956866	1956782	View	Tyr	GTA	0	0	70.96	42.07	28.89	Both

chrlinear	11	978026	977952	View	Val	GAC	0	0	86.72	64.03	22.69	Both

chrcircular	34	1255054	1254979	View	Val	TAC	0	0	94.30	71.42	22.88	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.