tRNAscan-SE Analysis of the Agrobacterium tumefaciens C58 UWash Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCGGTTCGATCCCGCTTAGCTCCACCA chrlinear.trna9-AlaGGC Sc: 86.51  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCAGCGGTTCGATCCCGCTCAGCTCCACCA chrlinear.trna7-AlaTGC Sc: 95.66  
GGGGCTGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCAGCGGTTCGATCCCGCTCAGCTCCACCA chrlinear.trna4-AlaTGC Sc: 95.66  
GGGGCTGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCAGCGGTTCGATCCCGCTCAGCTCCACCA chrcircular.trna22-AlaTGC Sc: 95.66  
GGGGCTGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCAGCGGTTCGATCCCGCTCAGCTCCACCA chrcircular.trna2-AlaTGC Sc: 95.66  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCGTAGCTCAGCTGGAtAGAGCACCAGACTACGAATCTGGGG...........GtCAGGAGTTCGAATCTCTTCGGGTGCGCCA chrcircular.trna4-ArgACG Sc: 89.63  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCGTAGCTCAGCTGGAtAGAGTGTTGGATTCCGATTCCAAAG...........GtCACAGGTTCGAATCCTGTCGGGTGCGCCA chrcircular.trna19-ArgCCG Sc: 86.49  



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCCCTTAGCTCAACTGGAtAGAGCAACTGCCTTCTAAGCAGTAG...........GtCGCAGGTTCGAGTCCTGCAGGGGTCGCCA chrcircular.trna18-ArgTCT Sc: 93.45  



Asn tRNAs



>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
TCCCTGGTAGCTCAGCGGTA.GAGCATTCGACTGTTAATCGACAG...........GtCGCCGGTTCGAATCCGGCCCGGGGAGCCA chrcircular.trna36-AsnGTT Sc: 85.96  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAGTTGGTtAGAGTGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGCCCCGTCACTCGCGCCA chrcircular.trna12-AspGTC Sc: 92.83  
GCGGGTGTAGCTCAGTCGGTtAGAGTGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGCCCCGTCACTCGCGCCA chrcircular.trna13-AspGTC Sc: 90.74  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCTCGTGGCGGAGTGGTG.ACGCAGAGGACTGCAAATCCTTGT...........ACCCCGGTTCAATTCCGGGCGAGGCCTCCA chrcircular.trna30-CysGCA Sc: 70.77  



Gln tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGAATAGTTCAATGGTA.GAACGACGGACTCTGACTCCGTTA...........A.TCTTGGTTCGAGTCCAGGTTCCCCAGCCA chrlinear.trna10-GlnCTG Sc: 72.58  

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGCGTCGCCAAGCGGTA.AGGCACCGGTTTTTGGTACCGGCA...........TtCCCAGGTTCGAATCCTGGCGCCCCAGCCA chrcircular.trna9-GlnTTG Sc: 73.94  



Glu tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCGCCCTTCGTCTATCGGTtA.GGACGTCAGATTTTCATTCTGAAA...........AGAGGGGTTCGACTCCCCTAGGGCGTGCCA chrcircular.trna15-GluTTC Sc: 52.80  
GCGCCCTTCGTCTATCGGTtA.GGACGTCAGATTTTCATTCTGAAA...........AGAGGGGTTCGACTCCCCTAGGGCGTGCCA chrcircular.trna14-GluTTC Sc: 52.80  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAGGGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGAGGGTTCAAATCCCTTCGCCCGCTCCA chrlinear.trna2-GlyGCC Sc: 87.04  
GCGGGTGTAGCTCAGGGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGAGGGTTCAAATCCCTTCGCCCGCTCCA chrcircular.trna20-GlyGCC Sc: 87.04  

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAATGGTA.GAGCAGCAGCTTCCCAAGCTGAAT...........A.CGAGGGTTCGATTCCCTTCACCCGCTCCA chrcircular.trna5-GlyCCC Sc: 80.72  

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCGGGTATAGCTCAATGGTA.GAGCAGCAGCCTTCCAAGCTGAAT...........A.CGCGGGTTCGATTCCCGCTACCCGCTCCA chrcircular.trna27-GlyTCC Sc: 83.28  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGTTGTAGCTCAGTTGGTtAGAGCGCAGGTTTGTGGCACCTGAG...........GtCGGTGGTTCGACCCCACTCAACCGTACCA chrcircular.trna8-HisGTG Sc: 83.76  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGTAGTTCGAGTCTACCCGGGCCCACCA chrlinear.trna6-IleGAT Sc: 99.89  
GGGCCCGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGTAGTTCGAGTCTACCCGGGCCCACCA chrlinear.trna3-IleGAT Sc: 99.89  
GGGCCCGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGTAGTTCGAGTCTACCCGGGCCCACCA chrcircular.trna21-IleGAT Sc: 99.89  
GGGCCCGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGTAGTTCGAGTCTACCCGGGCCCACCA chrcircular.trna1-IleGAT Sc: 99.89  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>............<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGTCGTGGCGGAATTGGTaGACGCGCAGCGTTGAGGTCGCTGTGGG.GCAA.......CCCGTGGAAGTTCGAGTCTTCT.CGACCGCACCA chrcircular.trna32-LeuGAG Sc: 70.40  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGATGGCGGAATTGGTaGACGCGCCAGCTTCAGGTGCTGGTACTCGAAA......GGGTGTGGAGGTTCGAGTCCTCT.TCTGGGCACCA chrcircular.trna39-LeuCAG Sc: 77.25  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>............<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGGTATGGCGGAATTGGTaGACGCATTGGTTTTAGGTACCAACGCTT..........CGGCGTGGGAGTTCGAGTCTCTC.TACCCGCACCA chrcircular.trna31-LeuTAG Sc: 70.05  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>............<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTGGTGGAATTGGTaGACGCGCCGGACTCAAAATCCGGTTCC.GAAA.......GGAGTGTCGGTTCGACCCCGAC.CACCCGCACCA chrlinear.trna1-LeuCAA Sc: 72.97  

>>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>............<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGCATGGTGAAATTGGTaAACACATCGCACTTAAAATGCGCCGCC.TCT........GGCTTGCCGGTTCAAGTCCGGC.TGCGGGCACCA chrcircular.trna37-LeuTAA Sc: 72.37  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGATTAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGG...........GtCGTAGGTTCGAGCCCTACATCACCCACCA chrcircular.trna16-LysCTT Sc: 97.03  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GAGAGCGTAGCTCAGCCGGTAGAGCAACTGACTTTTAATCAGTAG...........GtCCAGGGTTCGAATCCCTGCGCTCTCACCA chrcircular.trna17-LysTTT Sc: 92.90  



Met tRNAs


>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGGGTAGCTCAGGT.GGTtA.GAGCAGCGGAATCATAATCCGCGT...........GtCGGGGGTTCAAGTCCCTCTCCCGCTACCA chrlinear.trna13-MetCAT Sc: 83.79  
GGGCCTGTAGCTCAAT..GGTtA.GAGCCGGCGGCTCATAACCGCTTG...........GtTGGGAGTTCGAGTCTCTCCGGGCCCACCA chrcircular.trna24-MetCAT Sc: 82.10  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chrlinear.trna8-MetCAT Sc: 81.76  
CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chrlinear.trna5-MetCAT Sc: 81.76  
CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chrcircular.trna3-MetCAT Sc: 81.76  
CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chrcircular.trna23-MetCAT Sc: 81.76  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCGGATAGCTCAGTTGGTAGAGCAGCGGATTGAAAATCCGCGT...........GtCGGTGGTTCAAATCCGCCTCCGGGCACCA chrcircular.trna6-PheGAA Sc: 92.15  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGCGTAGCGCAGCCcGGTAGCGCACTTGACTGGGGGTCAAGGG...........GtCGTGGGTTCGAATCCCGCCGCTCCGACCA chrcircular.trna35-ProGGG Sc: 81.90  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTGTAGCGCAGTCtGGTAGCGCACGTCGTTCGGGACGACGGG...........GtCGGAGGTTCGAATCCTCTCACTCCGACCA chrcircular.trna10-ProCGG Sc: 85.78  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTGTAGCGCAGTCtGGTAGCGCATCTGGTTTGGGACCAGAGG...........GtCGGGAGTTCGAATCTCTCCACTCCGACCA chrcircular.trna29-ProTGG Sc: 86.97  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGACAGGTGGCCGAGTGGTttA.AGGCGCACGCCTGGAACGCGTGTGTGCGTGAAA..GCGTACCGTGGGTTCGAATCCCAC..CCTGTCCGCCA chrcircular.trna40-SerGGA Sc: 82.03  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGTGGTcgA.ATGCACCGCACTCGAAATGCGGCATACCTGCAA..GGGTATCGTGGGTTCGAATCCCAC..CCTCTCCGCCA chrlinear.trna12-SerCGA Sc: 74.37  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGATGGGTGTCCGAGTGGTttA.AGGAACCGGTCTTGAAAACCGGCGTGCGTGAGA..GCGTACCGTGGGTTCGAATCCCAC..CCCATCTGCCA chrcircular.trna33-SerTGA Sc: 70.89  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGTGGTcgA.AGGCGCTCCCCTGCTAAGGGAGTATACGTCAAAa.GCGTATCGTGGGTTCGAATCCCAT..CCTCTCCGCCA chrcircular.trna11-SerGCT Sc: 73.86  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGCTATAGCTCAGG.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GcCGAGAGTTCAAATCTCTCTAGCAGCACCA chrcircular.trna7-ThrGGT Sc: 84.06  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCTTTAGCTCAGTTGGTA.GAGCACGTCATTCGTAATGACGGG...........GtCACGTGTTCGAGTCACGTAAGCGGCACCA chrcircular.trna38-ThrCGT Sc: 91.69  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCTTGTAGCTCAGTTGGTA.GAGCACCTGATTTGTAATCAGGGG...........GtCACGAGTTCGAACCTTGTCGGGGGCACCA chrcircular.trna25-ThrTGT Sc: 90.75  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGTATAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGCAG...........GtCGTAAGTTCGAGCCTTACTGCCCCTGCCA chrcircular.trna28-TrpCCA Sc: 85.38  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>.>.........<.<...>>>>>.......<<<<<<<<<<<<....
GGAGGGATGCCCGAGTGGTtaA.AGGGGACGGACTGTAAATCCGTTGGCTA.......CGCCTaCGTTGGTTCAAATCCAACTCCCTCCACCA chrcircular.trna26-TyrGTA Sc: 70.96  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGTGTAGCTCAGC.GGGA.GAGCACTACGTTGACATCGTAGGG...........GtCACAGGTTCAATCCCTGTCACGCCCACCA chrlinear.trna11-ValGAC Sc: 86.72  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGATTAGCTCAGTTGGTA.GAGCGCCTCGTTTACACCGAGGAT...........GtCGGGAGTTCGAGTCTCTCATCGCCCACCA chrcircular.trna34-ValTAC Sc: 94.30

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.