tRNAscan-SE Analysis of the Agrobacterium tumefaciens C58 Cereon Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chrlinear	9	1221185	1221110	Ala	GGC	0	0	86.51	68.27	18.24	Both

chrcircular	2	58688	58763	Ala	TGC	0	0	95.66	79.36	16.30	Both
chrcircular	22	2516682	2516607	Ala	TGC	0	0	95.66	79.36	16.30	Both
chrlinear	4	1043760	1043835	Ala	TGC	0	0	95.66	79.36	16.30	Both
chrlinear	7	1306243	1306318	Ala	TGC	0	0	95.66	79.36	16.30	Both

chrcircular	4	382707	382783	Arg	ACG	0	0	89.63	67.47	22.16	Both

chrcircular	19	2330135	2330211	Arg	CCG	0	0	86.49	64.25	22.24	Both

chrcircular	18	1792410	1792486	Arg	TCT	0	0	93.45	73.89	19.56	Both

chrcircular	36	1217196	1217122	Asn	GTT	0	0	85.96	64.73	21.23	Both

chrcircular	13	1255708	1255784	Asp	GTC	0	0	90.74	76.71	14.03	Both
chrcircular	12	1255590	1255666	Asp	GTC	0	0	92.83	78.81	14.02	Both

chrcircular	30	1711154	1711081	Cys	GCA	0	0	70.77	42.90	27.87	Both

chrlinear	10	1118624	1118551	Gln	CTG	0	0	72.58	45.05	27.53	Both

chrcircular	9	809488	809562	Gln	TTG	0	0	73.94	45.45	28.49	Both

chrcircular	14	1567263	1567337	Glu	TTC	0	0	52.80	28.31	24.49	Eufind
chrcircular	15	1567790	1567864	Glu	TTC	0	0	52.80	28.31	24.49	Eufind

chrcircular	5	430677	430750	Gly	CCC	0	0	80.72	64.79	15.93	Both

chrcircular	20	2446566	2446640	Gly	GCC	0	0	87.04	68.54	18.50	Both
chrlinear	2	779535	779609	Gly	GCC	0	0	87.04	68.54	18.50	Both

chrcircular	27	1956846	1956773	Gly	TCC	0	0	83.28	66.52	16.76	Both

chrcircular	8	606856	606932	His	GTG	0	0	83.76	59.97	23.79	Both

chrcircular	1	58553	58629	Ile	GAT	0	0	99.89	75.64	24.25	Both
chrcircular	21	2516817	2516741	Ile	GAT	0	0	99.89	75.64	24.25	Both
chrlinear	3	1043625	1043701	Ile	GAT	0	0	99.89	75.64	24.25	Both
chrlinear	6	1306108	1306184	Ile	GAT	0	0	99.89	75.64	24.25	Both

chrlinear	1	576115	576199	Leu	CAA	0	0	72.97	49.45	23.52	Both

chrcircular	39	230918	230832	Leu	CAG	0	0	77.25	48.84	28.41	Both

chrcircular	32	1543452	1543368	Leu	GAG	0	0	70.40	35.25	35.15	Both

chrcircular	37	1184830	1184747	Leu	TAA	0	0	72.37	50.21	22.16	Both

chrcircular	31	1652503	1652421	Leu	TAG	0	0	70.05	41.32	28.73	Both

chrcircular	16	1623612	1623687	Lys	CTT	0	0	97.03	73.37	23.66	Both

chrcircular	17	1784302	1784377	Lys	TTT	0	0	92.90	64.93	27.97	Both

chrcircular	23	2512406	2512330	Met	CAT	0	0	81.76	54.87	26.89	Both
chrcircular	3	62964	63040	Met	CAT	0	0	81.76	54.87	26.89	Both
chrlinear	5	1048036	1048112	Met	CAT	0	0	81.76	54.87	26.89	Both
chrlinear	8	1310430	1310506	Met	CAT	0	0	81.76	54.87	26.89	Both
chrcircular	24	2128565	2128490	Met	CAT	0	0	82.10	61.49	20.61	Both
chrlinear	13	780888	780812	Met	CAT	0	0	83.79	68.88	14.91	Both

chrcircular	6	496313	496388	Phe	GAA	0	0	92.15	72.64	19.51	Both

chrcircular	10	813141	813217	Pro	CGG	0	0	85.78	57.35	28.43	Both

chrcircular	35	1221195	1221119	Pro	GGG	0	0	81.90	58.98	22.92	Both

chrcircular	29	1791792	1791716	Pro	TGG	0	0	86.97	59.81	27.16	Both

chrlinear	12	948268	948179	Ser	CGA	0	0	74.37	43.21	31.16	Both

chrcircular	11	1011012	1011102	Ser	GCT	0	0	73.86	48.05	25.81	Both

chrcircular	40	128502	128413	Ser	GGA	0	0	82.03	52.23	29.80	Both

chrcircular	33	1491924	1491835	Ser	TGA	0	0	70.89	35.77	35.12	Both

chrcircular	38	411151	411076	Thr	CGT	0	0	91.69	60.54	31.15	Both

chrcircular	7	531673	531747	Thr	GGT	0	0	84.06	57.12	26.94	Both

chrcircular	25	1970192	1970117	Thr	TGT	0	0	90.75	75.42	15.33	Both

chrcircular	28	1935218	1935143	Trp	CCA	0	0	85.38	59.18	26.20	Both

chrcircular	26	1956956	1956872	Tyr	GTA	0	0	70.96	42.07	28.89	Both

chrlinear	11	978034	977960	Val	GAC	0	0	86.72	64.03	22.69	Both

chrcircular	34	1255144	1255069	Val	TAC	0	0	94.30	71.42	22.88	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.