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tRNAscan-SE Analysis of Aeropyrum pernix

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tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 3 334925 335001 View Ala CGC gaggctgggc gcgggccttc 0 0 93.45 82.94 10.51   chr 39 455727 455651 View Ala GGC gcgcgggtgt tacaacacct 0 0 88.60 77.44 11.16   chr 27 1194213 1194137 View Ala TGC tagcctgggt ccctacacac 0 0 93.25 82.09 11.16     chr 18 1666770 1666846 View Arg CCG ttatcatgaa cttatataac 0 0 20.48 24.64 -4.16   chr 2 200265 200336 View Arg CCG cataaagcaa caaaccacac 0 0 24.36 29.69 -5.33   chr 1 198449 198526 View Arg CCG agatcagagg tcagacccgc 0 0 92.70 83.64 9.06   chr 26 1275750 1275673 View Arg CCT aaggagaagg caccgccaaa 0 0 91.62 80.85 10.77   chr 9 584144 584222 View Arg GCG aatagagcag catcttaaca 0 0 92.86 83.81 9.05   chr 17 1665596 1665674 View Arg TCG ccaataagga caacacactc 0 0 92.38 83.33 9.05   chr 12 1011525 1011646 View Arg TCT cactcggagc caacagcccc 1011564 1011607 82.42 73.37 9.05     chr 41 402462 402386 View Asn GTT tagggagggt gaaaccatcc 0 0 86.11 73.37 12.74     chr 4 372080 372278 View Asp GTC tgtgaaccgg ataatcctcg 372120 372240 54.79 40.69 14.10     chr 23 1391457 1391362 View Cys GCA actaactggg tctaaccctt 1391419 1391402 65.01 50.90 14.11     chr 20 1486515 1486440 View Gln CTG atcgacaggt cccctacagc 0 0 70.54 51.19 19.35   chr 33 942051 941976 View Gln TTG tcgggccagt tctttcacaa 0 0 71.26 53.53 17.73     chr 14 1139987 1140064 View Glu CTC aagcgcggga tactattaat 0 0 84.08 69.98 14.10   chr 24 1391318 1391241 View Glu TTC gcaatgggga tacaagaggg 0 0 84.64 70.54 14.10     chr 32 986027 985949 View Gly CCC atagtatggc caaacacctc 0 0 90.77 80.79 9.98   chr 38 467913 467835 View Gly GCC cagtctggac cccgtcatcc 0 0 91.07 81.19 9.88   chr 19 1528663 1528585 View Gly TCC gcctgcgcgg ggcattttaa 0 0 91.33 81.35 9.98     chr 22 1422799 1422722 View His GTG aacaagggtg caaaccatcc 0 0 91.56 80.23 11.33     chr 10 606038 606114 View Ile GAT agtggcctgg cccttccttc 0 0 95.34 82.08 13.26     chr 6 446761 446848 View Leu CAA tattatgggt cccctctaca 0 0 72.62 53.52 19.10   chr 25 1295880 1295793 View Leu CAG gattatcggt ctggagagca 0 0 79.97 59.07 20.90   chr 28 1178929 1178842 View Leu GAG tctacacggt taatactgcc 0 0 79.89 58.99 20.90   chr 36 492006 491919 View Leu TAA tacctatggt ccctgcggtt 0 0 77.60 58.50 19.10   chr 42 369232 369145 View Leu TAG actacacggt ccccacgcct 0 0 80.53 59.62 20.91     chr 49 236428 236316 View Lys CTT cggcacaagc caacagcccc 0 0 93.13 83.49 9.64   chr 15 1176267 1176379 View Lys TTT ggccgggagt caacagcccc 0 0 91.48 81.84 9.64     chr 13 1026344 1026420 View Met CAT ggggtagcct taagcggggc 0 0 80.37 55.11 25.26   chr 47 295529 295405 View Met CAT tatacagggc gcccccaaag 295491 295444 85.24 75.00 10.24   chr 5 428497 428611 View Met CAT tgggaggcct catcctagcc 428535 428572 82.11 68.84 13.27     chr 34 881960 881886 View Phe GAA ggtataagct gaagctaaaa 0 0 87.53 73.56 13.97     chr 51 150360 150239 View Pro CGG tagcaagcgg ccatcccaag 0 0 84.43 70.83 13.60   chr 30 1161734 1161620 View Pro GGG tagacggcca tgccgtccgc 1161695 1161659 71.31 57.97 13.34   chr 44 339994 339917 View Pro TGG gccagtttgt gctcagctga 0 0 86.35 72.29 14.06     chr 43 340125 340001 View Ser CGA gcgaggaggt gtttgtgggg 340087 340052 58.61 43.20 15.41   chr 50 192778 192691 View Ser GCT aaatctgggt taaaggctcc 0 0 81.64 67.92 13.72   chr 29 1163580 1163492 View Ser GGA ttgcataggt acattacagg 0 0 70.89 48.91 21.98   chr 35 872084 871996 View Ser TGA tttagagggt cacactacaa 0 0 70.62 54.50 16.12     chr 52 125186 125063 View Thr CGT aaggatgagg cccctataaa 125150 125102 78.20 68.24 9.96   chr 31 997237 997162 View Thr GGT taacggaggg aatcccatcc 0 0 88.81 77.11 11.70   chr 11 898968 899040 View Thr TGT cccaggtaag cacccttgcc 0 0 55.39 49.23 6.16   chr 48 295325 295231 View Thr TGT acctgggagg caaacatctt 0 0 90.42 80.46 9.96     chr 40 403103 402990 View Trp CCA aactgggggc cagcccccat 0 0 88.00 76.64 11.36     chr 21 1462307 1462194 View Tyr GTA gaatagtggt ttagggtccc 1462271 1462233 71.65 53.41 18.24     chr 37 478234 478150 View Undet ??? ttttcaatta caccaccgcc 0 0 23.61 24.88 -1.27     chr 46 329043 328963 View Val CAC gattacatga ttttggatgc 0 0 20.95 17.74 3.21   chr 45 330242 330165 View Val CAC gagccctaag acaattgtat 0 0 88.39 75.41 12.98   chr 16 1277182 1277259 View Val GAC ctggggccca acaccttcca 0 0 87.94 74.96 12.98   chr 8 580655 580733 View Val TAC acacagctat aaactcgatt 0 0 30.34 27.04 3.30   chr 7 542607 542684 View Val TAC ctggggccca gcgcatcata 0 0 88.94 75.96 12.98   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.