tRNAscan-SE Analysis of the Acinetobacter sp ADP1 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	45	3281996	3282071	View	Ala	GGC	0	0	83.49	63.70	19.79	Both

chr	19	647742	647817	View	Ala	TGC	0	0	89.91	70.57	19.34	Both
chr	2	20120	20195	View	Ala	TGC	0	0	89.91	70.57	19.34	Both
chr	31	1662404	1662479	View	Ala	TGC	0	0	89.91	70.57	19.34	Both
chr	4	214905	214980	View	Ala	TGC	0	0	89.91	70.57	19.34	Both
chr	50	3563078	3563003	View	Ala	TGC	0	0	89.91	70.57	19.34	Both
chr	58	3074756	3074681	View	Ala	TGC	0	0	89.91	70.57	19.34	Both
chr	60	2945659	2945584	View	Ala	TGC	0	0	89.91	70.57	19.34	Both

chr	54	3107632	3107556	View	Arg	ACG	0	0	83.63	59.18	24.45	Both
chr	55	3107508	3107432	View	Arg	ACG	0	0	83.63	59.18	24.45	Both
chr	56	3102490	3102414	View	Arg	ACG	0	0	83.63	59.18	24.45	Both

chr	34	2230240	2230316	View	Arg	CCG	0	0	81.26	64.65	16.61	Both

chr	44	2899595	2899667	View	Arg	CCT	0	0	64.83	48.36	16.47	Both

chr	15	642880	642956	View	Arg	TCT	0	0	98.82	78.36	20.46	Both

chr	66	1340790	1340715	View	Asn	GTT	0	0	83.01	56.22	26.79	Both
chr	35	2535413	2535488	View	Asn	GTT	0	0	83.03	56.52	26.51	Both
chr	67	1340707	1340632	View	Asn	GTT	0	0	83.03	56.52	26.51	Both
chr	68	1337709	1337634	View	Asn	GTT	0	0	83.03	56.52	26.51	Both

chr	21	786224	786300	View	Asp	GTC	0	0	94.40	75.21	19.19	Both
chr	22	786348	786424	View	Asp	GTC	0	0	94.40	75.21	19.19	Both
chr	24	786558	786634	View	Asp	GTC	0	0	94.40	75.21	19.19	Both

chr	36	2786083	2786156	View	Cys	GCA	0	0	57.20	43.93	13.27	Both

chr	42	2844061	2844135	View	Gln	TTG	0	0	64.07	39.08	24.99	Both
chr	39	2843775	2843849	View	Gln	TTG	0	0	66.90	44.01	22.89	Both
chr	40	2843872	2843946	View	Gln	TTG	0	0	66.90	44.01	22.89	Both
chr	41	2843969	2844043	View	Gln	TTG	0	0	66.90	44.01	22.89	Both
chr	43	2844227	2844301	View	Gln	TTG	0	0	66.90	44.01	22.89	Both

chr	46	3282097	3282172	View	Glu	TTC	0	0	56.39	29.00	27.39	Both
chr	69	1140244	1140169	View	Glu	TTC	0	0	56.39	29.00	27.39	Both
chr	70	1139879	1139804	View	Glu	TTC	0	0	56.39	29.00	27.39	Both
chr	71	1136086	1136011	View	Glu	TTC	0	0	56.39	29.00	27.39	Both
chr	72	1135985	1135910	View	Glu	TTC	0	0	56.39	29.00	27.39	Both

chr	65	1478947	1478872	View	Gly	GCC	0	0	95.06	70.89	24.17	Both
chr	75	145538	145463	View	Gly	GCC	0	0	95.06	70.89	24.17	Both
chr	76	145421	145346	View	Gly	GCC	0	0	95.06	70.89	24.17	Both

chr	7	297010	297085	View	Gly	TCC	0	0	84.97	58.41	26.56	Both

chr	16	642995	643070	View	His	GTG	0	0	81.86	62.40	19.46	Both

chr	1	20007	20083	View	Ile	GAT	0	0	98.53	74.40	24.13	Both
chr	18	647629	647705	View	Ile	GAT	0	0	98.53	74.40	24.13	Both
chr	3	214792	214868	View	Ile	GAT	0	0	98.53	74.40	24.13	Both
chr	30	1662291	1662367	View	Ile	GAT	0	0	98.53	74.40	24.13	Both
chr	49	3563191	3563115	View	Ile	GAT	0	0	98.53	74.40	24.13	Both
chr	57	3074869	3074793	View	Ile	GAT	0	0	98.53	74.40	24.13	Both
chr	59	2945772	2945696	View	Ile	GAT	0	0	98.53	74.40	24.13	Both

chr	13	581949	582035	View	Leu	CAA	0	0	69.73	40.52	29.21	Both

chr	10	357798	357882	View	Leu	GAG	0	0	59.44	41.62	17.82	Both

chr	37	2786172	2786257	View	Leu	TAA	0	0	70.97	41.66	29.31	Both
chr	38	2787951	2788036	View	Leu	TAA	0	0	70.97	41.66	29.31	Both

chr	27	1334581	1334665	View	Leu	TAG	0	0	77.55	50.20	27.35	Both
chr	29	1334814	1334898	View	Leu	TAG	0	0	77.55	50.20	27.35	Both

chr	73	433857	433782	View	Lys	TTT	0	0	92.37	62.94	29.43	Both
chr	74	433673	433598	View	Lys	TTT	0	0	92.37	62.94	29.43	Both

chr	32	1793951	1794027	View	Met	CAT	0	0	81.10	57.85	23.25	Both
chr	11	358378	358454	View	Met	CAT	0	0	82.06	58.00	24.06	Both
chr	12	358542	358618	View	Met	CAT	0	0	82.06	58.00	24.06	Both
chr	33	2034702	2034778	View	Met	CAT	0	0	89.74	63.50	26.24	Both
chr	61	2831819	2831743	View	Met	CAT	0	0	96.88	79.16	17.72	Both
chr	62	2831514	2831438	View	Met	CAT	0	0	96.88	79.16	17.72	Both

chr	51	3308908	3308833	View	Phe	GAA	0	0	85.52	65.61	19.91	Both
chr	52	3308706	3308631	View	Phe	GAA	0	0	85.52	65.61	19.91	Both

chr	14	642743	642819	View	Pro	TGG	0	0	85.67	55.71	29.96	Both
chr	17	643075	643151	View	Pro	TGG	0	0	85.67	55.71	29.96	Both

chr	53	3107733	3107644	View	Ser	GCT	0	0	77.61	41.16	36.45	Both

chr	47	3327459	3327548	View	Ser	GGA	0	0	65.02	32.93	32.09	Both

chr	26	1148051	1148140	View	Ser	TGA	0	0	65.75	29.58	36.17	Both
chr	63	2752328	2752239	View	Ser	TGA	0	0	65.75	29.58	36.17	Both

chr	8	297099	297173	View	Thr	GGT	0	0	83.04	48.61	34.43	Both

chr	48	3361111	3361186	View	Thr	TGT	0	0	94.17	73.63	20.54	Both
chr	5	296755	296830	View	Thr	TGT	0	0	94.17	73.63	20.54	Both

chr	28	1334716	1334789	View	Trp	CCA	0	0	62.59	31.02	31.57	Both
chr	9	298591	298666	View	Trp	CCA	0	0	78.91	62.45	16.46	Both

chr	6	296889	296972	View	Tyr	GTA	0	0	65.24	29.71	35.53	Both

chr	64	2169719	2169643	View	Val	GAC	0	0	82.28	51.56	30.72	Both

chr	20	786125	786200	View	Val	TAC	0	0	97.11	77.89	19.22	Both
chr	23	786447	786522	View	Val	TAC	0	0	97.11	77.89	19.22	Both
chr	25	786732	786807	View	Val	TAC	0	0	97.11	77.89	19.22	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.